category: Biospecimen
description: A liquid bulk product produced according to specified lab protocols,
  from a sample or analyte, intended for further analysis.
links:
- label: Analyte references the Sample it is derived from.
  name: Sample
  required: true
- label: Analyte references the Portion it is derived from.
  name: Portion
  required: true
properties:
  a260_a280_ratio:
    cde_id: 5432595
    description: Numeric value that represents the sample ratio of nucleic acid absorbance
      at 260 nm and 280 nm, used to determine a measure of DNA purity.
    required: 'False'
    source: caDSR
    term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=5432595%20and%20ver_nr=1.0
    type: Number
  amount:
    description: Weight in grams or volume in mL
    required: 'False'
    type: Number
  analyte_id:
    key: 'yes'
    required: 'False'
    type: String
  analyte_quantity:
    description: The quantity in micrograms (ug) of the analyte(s) derived from the
      analyte(s) shipped for sequencing and characterization.
    required: 'False'
    type: Number
  analyte_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
  analyte_type:
    cde_id: 2513915
    description: Text term that represents the kind of molecular specimen analyte.
    enum:
    - DNA
    - EBV Immortalized Normal
    - FFPE DNA
    - FFPE RNA
    - GenomePlex (Rubicon) Amplified DNA
    - Repli-G (Qiagen) DNA
    - Repli-G Pooled (Qiagen) DNA
    - Repli-G X (Qiagen) DNA
    - RNA
    - Total RNA
    - cfDNA
    - Nuclei RNA
    required: 'True'
    source: caDSR
    term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=2513915%20and%20ver_nr=2.0
    type: Enumeration
  analyte_type_id:
    cde_id: 5432508
    description: A single letter code used to identify a type of molecular analyte.
    enum:
    - D
    - E
    - G
    - H
    - R
    - S
    - T
    - W
    - X
    - Y
    required: 'False'
    source: caDSR
    term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=5432508%20and%20ver_nr=1.0
    type: Enumeration
  analyte_volume:
    description: The volume in microliters (ml) of the aliquot(s) derived from the
      analyte(s) shipped for sequencing and characterization.
    required: 'False'
    type: Number
  concentration:
    cde_id: 5432594
    description: Numeric value that represents the concentration of an analyte or
      aliquot extracted from the sample or sample portion, measured in milligrams
      per milliliter.
    required: 'False'
    source: caDSR
    term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=5432594%20and%20ver_nr=1.0
    type: Number
  experimental_protocol_type:
    description: The type of experiment used to extract the analyte.
    enum:
    - aDNA Preparation Type
    - Allprep FFPE DNA
    - Allprep RNA Extraction
    - Chemical Lysis DNA Extraction
    - Genomplex
    - HighPure miRNA (Allprep DNA) FFPE RNA
    - mirVana (Allprep DNA) RNA
    - nRNA - Melanoma Protocol
    - Pre-extracted DNA received by TSS
    - Repli-G
    - Repli-G X
    - Total RNA
    required: 'False'
    type: Enumeration
  normal_tumor_genotype_snp_match:
    cde_id: 4588156
    description: Text term that represents whether or not the genotype of the normal
      tumor matches or if the data is not available.
    enum:
    - 'Yes'
    - 'No'
    - Unknown
    - Not Reported
    - Not Allowed To Collect
    required: 'False'
    source: caDSR
    term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=4588156%20and%20ver_nr=1.0
    type: Enumeration
  portion_id:
    key: 'yes'
    required: 'False'
    type: String
  portion_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
  project_id:
    key: 'yes'
    required: 'False'
    type: String
  project_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
  ribosomal_rna_28s_16s_ratio:
    description: The 28S/18S ribosomal RNA band ratio used to assess the quality of
      total RNA.
    required: 'False'
    type: Number
  rna_integrity_number:
    description: A numerical assessment of the integrity of RNA based on the entire
      electrophoretic trace of the RNA sample, including the presence or absence of
      degradation products.
    required: 'False'
    source: NCIt
    term_url: https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C63637
    type: Number
  sample_id:
    key: 'yes'
    required: 'False'
    type: String
  sample_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
  spectrophotometer_method:
    cde_id: 3008378
    description: Name of the method used to determine the concentration of purified
      nucleic acid within a solution.
    required: 'False'
    source: caDSR
    term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=3008378%20and%20ver_nr=1.0
    type: String
  well_number:
    cde_id: 5432613
    description: Numeric value that represents the the well location within a plate
      for the analyte or aliquot from the sample.
    required: 'False'
    source: caDSR
    term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=5432613%20and%20ver_nr=1.0
    type: String
title: Analyte
type: object
uniqueKeys:
- - analyte_id
  - analyte_submitter_id