category: Administrative description: 'The collection of all data related to a specific subject in the context of a specific project. ' links: - label: Case references the Project it belongs to. name: Project required: 'True' properties: case_id: key: 'yes' required: 'False' type: String case_is_ref: description: A biospecimen entity which is used as a reference sample for determining relative protein abundances in labeling experiments. enum: - 'Yes' - 'No' required: 'False' type: Enumeration case_submitter_id: key: 'yes' required: 'True' type: String consent_type: description: The text term used to describe the type of consent obtain from the subject for participation in the study. enum: - Consent by Death - Consent Exemption - Consent Waiver - Informed Consent required: 'False' type: Enumeration days_to_consent: description: Number of days between the date used for index and the date the subject consent was obtained for participation in the study. required: 'False' type: Integer days_to_lost_to_followup: cde_id: 6154721 description: The number of days between the date used for index and to the date the patient was lost to follow-up. source: caDSR term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=6154721%20and%20ver_nr=1.0 type: Integer disease_type: cde_id: 6161017 description: The text term used to describe the type of malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). enum: - Acinar Cell Neoplasms - Adenomas and Adenocarcinomas - Adnexal and Skin Appendage Neoplasms - Basal Cell Neoplasms - Blood Vessel Tumors - Chronic Myeloproliferative Disorders - Complex Epithelial Neoplasms - Complex Mixed and Stromal Neoplasms - Cystic, Mucinous and Serous Neoplasms - Ductal and Lobular Neoplasms - Epithelial Neoplasms, NOS - Fibroepithelial Neoplasms - Fibromatous Neoplasms - Germ Cell Neoplasms - Giant Cell Tumors - Gliomas - Granular Cell Tumors and Alveolar Soft Part Sarcomas - Hodgkin Lymphoma - Immunoproliferative Diseases - Leukemias, NOS - Lipomatous Neoplasms - Lymphatic Vessel Tumors - Lymphoid Leukemias - Malignant Lymphomas, NOS or Diffuse - Mast Cell Tumors - Mature B-Cell Lymphomas - Mature T- and NK-Cell Lymphomas - Meningiomas - Mesonephromas - Mesothelial Neoplasms - Miscellaneous Bone Tumors - Miscellaneous Tumors - Mucoepidermoid Neoplasms - Myelodysplastic Syndromes - Myeloid Leukemias - Myomatous Neoplasms - Myxomatous Neoplasms - Neoplasms, NOS - Neoplasms of Histiocytes and Accessory Lymphoid Cells - Nerve Sheath Tumors - Neuroepitheliomatous Neoplasms - Nevi and Melanomas - Non-Clear Cell Renal Cell Carcinoma - Odontogenic Tumors - Osseous and Chondromatous Neoplasms - Other Hematologic Disorders - Other Leukemias - Paragangliomas and Glomus Tumors - Plasma Cell Tumors - Precursor Cell Lymphoblastic Lymphoma - Soft Tissue Tumors and Sarcomas, NOS - Specialized Gonadal Neoplasms - Squamous Cell Neoplasms - Synovial-like Neoplasms - Thymic Epithelial Neoplasms - Transitional Cell Papillomas and Carcinomas - Trophoblastic neoplasms - Unknown - Not Reported - Not Applicable - Acute Lymphoblastic Leukemia - Acute Myeloid Leukemia - Adrenocortical Carcinoma - Bladder Urothelial Carcinoma - Brain Lower Grade Glioma - Breast Invasive Carcinoma - Burkitt Lymphoma - Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma - Cholangiocarcinoma - Chronic Lymphocytic Leukemia - Clear Cell Sarcoma of the Kidney - Colon Adenocarcinoma - Esophageal Carcinoma - Glioblastoma Multiforme - Head and Neck Squamous Cell Carcinoma - High-Risk Wilms Tumor - HIV+ Tumor Molecular Characterization Project - Cervical Cancer - HIV+ Tumor Molecular Characterization Project - Lung Cancer - Kidney Chromophobe - Kidney Renal Clear Cell Carcinoma - Kidney Renal Papillary Cell Carcinoma - Liver Hepatocellular Carcinoma - Lung Adenocarcinoma - Lung Squamous Cell Carcinoma - Lymphoid Neoplasm Diffuse Large B-cell Lymphoma - Mesothelioma - Multiple Myeloma - Neuroblastoma - Osteosarcoma - Ovarian Serous Cystadenocarcinoma - Pancreatic Adenocarcinoma - Pheochromocytoma and Paraganglioma - Prostate Adenocarcinoma - Rectum Adenocarcinoma - Rhabdoid Tumor - Sarcoma - Skin Cutaneous Melanoma - Stomach Adenocarcinoma - Testicular Germ Cell Tumors - Thymoma - Thyroid Carcinoma - Uterine Adenocarcinoma - Uterine Carcinosarcoma - Uterine Corpus Endometrial Carcinoma - Uveal Melanoma - Clear Cell Renal Cell Carcinoma - Early Onset Gastric Cancer - Glioblastoma - Other - Hepatocellular Carcinoma - Chromophobe Renal Cell Carcinoma - Papillary Renal Cell Carcinoma - Pediatric/AYA Brain Tumors - Oral Squamous Cell Carcinoma - Pancreatic Ductal Adenocarcinoma required: 'True' source: caDSR term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=6161017%20and%20ver_nr=1.0 type: Enumeration external_case_id: description: Identifier from other resources for this case required: 'False' type: String index_date: cde_id: 6154722 description: The text term used to describe the reference or anchor date used when for date obfuscation, where a single date is obscured by creating one or more date ranges in relation to this date. enum: - Diagnosis - First Patient Visit - First Treatment - Initial Genomic Sequencing - Sample Procurement - Study Enrollment - Recurrence required: 'False' source: caDSR term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=6154722%20and%20ver_nr=1. type: Enumeration lost_to_followup: cde_id: 6161018 description: The yes/no/unknown indicator used to describe whether a patient was unable to be contacted or seen for follow-up information. enum: - 'Yes' - 'No' - Unknown source: caDSR term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=6161018%20and%20ver_nr=1.0 type: Enumeration pool: description: Any biospecimen entity where multiple cases, samples or aliquots are combined to produce a reference. Sample pooling is commonly used for determining relative protein abundances in labeling experiments. enum: - 'Yes' - 'No' required: 'True' type: Enumeration primary_site: cde_id: 6161019 description: The text term used to describe the general location of the malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). enum: - Accessory sinuses - Anus and anal canal - Base of tongue - Bladder - Bones, joints and articular cartilage of limbs - Bones, joints and articular cartilage of other and unspecified sites - Brain - Breast - Bronchus and lung - Cervix uteri - Colon - Connective, subcutaneous and other soft tissues - Corpus uteri - Esophagus - Eye and adnexa - Floor of mouth - Gallbladder - Gum - Heart, mediastinum, and pleura - Hematopoietic and reticuloendothelial systems - Hypopharynx - Kidney - Larynx - Lip - Liver and intrahepatic bile ducts - Meninges - Nasal cavity and middle ear - Nasopharynx - Oropharynx - Other and ill-defined digestive organs - Other and ill-defined sites - Other and ill-defined sites in lip, oral cavity and pharynx - Other and ill-defined sites within respiratory system and intrathoracic organs - Other and unspecified female genital organs - Other and unspecified major salivary glands - Other and unspecified male genital organs - Other and unspecified parts of biliary tract - Other and unspecified parts of mouth - Other and unspecified parts of tongue - Other and unspecified urinary organs - Other endocrine glands and related structures - Ovary - Palate - Pancreas - Parotid gland - Penis - Peripheral nerves and autonomic nervous system - Placenta - Prostate gland - Pyriform sinus - Rectosigmoid junction - Rectum - Renal pelvis - Retroperitoneum and peritoneum - Skin - Small intestine - Spinal cord, cranial nerves, and other parts of central nervous system - Stomach - Testis - Thymus - Thyroid gland - Tonsil - Trachea - Ureter - Uterus, NOS - Vagina - Vulva - Unknown - Not Reported - Bile Duct - Blood - Bone - Bone Marrow - Cervix - Colorectal - Eye - Head and Neck - Liver - Lung - Nervous System - Not Applicable - Pleura - Prostate - Soft Tissue - Thyroid - Uterus - Adrenal gland - Lymph nodes required: 'True' source: caDSR term_url: https://cadsr.cancer.gov/onedata/dmdirect/NIH/NCI/CO/CDEDD?filter=CDEDD.ITEM_ID=6161019%20and%20ver_nr=1.0 type: Enumeration project_id: key: 'yes' required: 'False' type: String project_submitter_id: key: 'yes' required: 'False' type: String status: description: Specifies if the case is qualified or disqualified for any reason. Usually the data related to such cases may be not used in the data analysis. enum: - Qualified - Disqualified required: 'True' type: Enumeration taxon: description: A taxonomic group, such as a species. enum: - Trichomonas vaginalis - Bemisia tabaci (Gennadius) - Escherichia coli - Rattus norvegicus - Mycoplasma pneumoniae - Takifugu rubripes - Pneumocystis carinii - Canis familiaris - Arabidopsis thaliana - Dictyostelium discoideum - Oryza sativa - Plasmodium falciparum - Anopheles gambiae - Chlamydomonas reinhardtii - Caenorhabditis remanei - Schizosaccharomyces pombe - Pseudomonas aeruginosa - Staphylococcus aureus - Gallus gallus - Zea mays - Caenorhabditis briggsae - Haliotis rufescens - Xenopus laevis - Mucata mulata - Unspecified - Bos taurus - Caenorhabditis elegans - Danio rerio (zebrafish) - Hepatitis C virus - Saccharomyces cerevisiae - Drosophila melanogaster - Sus scrofa - Gasterosteus aculeatus (fish) - Homo sapiens - Mus musculus - Not Reported - Homo sapiens; Mus musculus required: 'True' type: Enumeration title: Case type: object uniqueKeys: - - case_id - case_submitter_id