- category: Biospecimen cde_id: '' cde_source: '' description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. entity: Aliquot - category: Metadata cde_id: '' cde_source: '' description: Experimental metadata describing how an aliquot was processed within a study. entity: Aliquot Run Metadata - category: Biospecimen cde_id: '' cde_source: '' description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. entity: Analyte - category: Administrative cde_id: '' cde_source: '' description: The collection of all data related to a specific subject in the context of a specific project. entity: Case - category: Clinical cde_id: '' cde_source: '' description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). entity: Demographic - category: Clinical cde_id: '' cde_source: '' description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. entity: Diagnosis - category: Data File cde_id: '' cde_source: '' description: Data files submitted by a user or generated by data analysis pipeline. entity: File - category: Biological cde_id: '' cde_source: '' description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. entity: Gene - category: Biospecimen cde_id: '' cde_source: '' description: A physical sub-part of any sample. entity: Portion - category: Administrative cde_id: C52647 cde_source: NCIt description: A broad framework of goals to be achieved. entity: Program - category: Administrative cde_id: C47885 cde_source: NCIt description: Any specifically defined piece of work that is undertaken or attempted to meet a single requirement. entity: Project - category: Metadata cde_id: C70817 cde_source: NCIt description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. entity: Protocol - category: 'Processed ' cde_id: '' cde_source: '' description: Published scientific research article describing a study. entity: Publication - category: Biospecimen cde_id: '' cde_source: '' description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. entity: Sample - category: Administrative cde_id: C63536 cde_source: NCIt description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. entity: Study - category: Metadata cde_id: '' cde_source: '' description: General experimental metadata describing study design. entity: Study Run Metadata - category: Metadata cde_id: '' cde_source: '' description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. entity: Workflow Metadata - category: 'Processed ' cde_id: '' cde_source: '' description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. entity: Gene Abundance - category: Clinical cde_id: '' cde_source: '' description: 'Record of a patient''s background regarding cancer events of blood relatives. ' entity: Family History - category: Clinical cde_id: '' cde_source: '' description: 'A visit by a patient or study participant to a medical professional. A clinical encounter that encompasses planned and unplanned trial interventions, procedures and assessments that may be performed on a subject. A visit has a start and an end, each described with a rule. The process by which information about the health status of an individual is obtained before and after a study has officially closed; an activity that continues something that has already begun or that repeats something that has already been done. ' entity: Follow-Up - category: Clinical cde_id: '' cde_source: '' description: 'Clinically relevant patient information not immediately resulting from genetic predispositions. ' entity: Exposure - category: Clinical cde_id: '' cde_source: '' description: 'Record of the administration and intention of therapeutic agents provided to a patient to alter the course of a pathologic process. ' entity: Treatment