- category: Biospecimen column: aliquot_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biospecimen column: aliquot_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biospecimen column: aliquot_submitter_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: sample_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot enumeration: '' example_value: '' key: Y reference_type: Aliquot references the Sample it is derived from. referenced_entity: Sample type_general: '' - category: Biospecimen column: sample_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: analyte_type constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '2513915' ea_cde_source: caDSR ea_description: Text term that represents the kind of molecular specimen analyte. entity: Aliquot enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: aliquot_quantity constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '' ea_cde_source: '' ea_description: The quantity in micrograms (ug) of the aliquot(s) derived from the analyte(s) shipped for sequencing and characterization. entity: Aliquot enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: aliquot_volume constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '' ea_cde_source: '' ea_description: The volume in microliters (ml) of the aliquot(s) derived from the analyte(s) shipped for sequencing and characterization. entity: Aliquot enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: amount constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '' ea_cde_source: '' ea_description: Weight in grams or volume in mL entity: Aliquot enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: analyte_type_id constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '5432508' ea_cde_source: caDSR ea_description: A single letter code used to identify a type of molecular analyte. entity: Aliquot enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: concentration constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '5432594' ea_cde_source: caDSR ea_description: Numeric value that represents the concentration of an analyte or aliquot extracted from the sample or sample portion, measured in milligrams per milliliter. entity: Aliquot enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: pool constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Pertaining to a portion of the whole; any one of two or more samples of something, of the same volume or weight. ea_cde_id: '' ea_cde_source: '' ea_description: Any biospecimen entity where multiple cases, samples or aliquots are combined to produce a reference. Sample pooling is commonly used for determining relative protein abundances in labeling experiments. entity: Aliquot enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: binary - category: Metadata column: aliquot_run_metadata_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Metadata column: aliquot_run_metadata_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Metadata column: study_run_metadata_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot Run Metadata enumeration: '' example_value: '' key: Y reference_type: Aliquot Run Metadata references the experimental run of the study. referenced_entity: Study Run Metadata type_general: '' - category: Metadata column: study_run_metadata_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: aliquot_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot Run Metadata enumeration: '' example_value: '' key: Y reference_type: Aliquot Run Metadata references the Aliquots used in an experimental run of the study. referenced_entity: Aliquot type_general: '' - category: Metadata column: aliquot_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: study_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot Run Metadata enumeration: '' example_value: '' key: Y reference_type: Aliquot Run Metadata references the Study under which the experiment was conducted. referenced_entity: Study type_general: '' - category: Metadata column: study_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Aliquot Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: experiment_type constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: General strategy used for differential analysis entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: label constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Reagent used for isobaric labeling or label-free entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: experiment_number constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Number associated with a specific run of the experiment entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: acquisition_file_name constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Representative file name for one of the raw data file from the run entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: fraction constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Number of fractions in the experimental run entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: instrument constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Make and model of the mass spectrometry instrument entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: operator constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Mass Spectrometry instrument operator entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: replicate_number constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Replicate number, if applicable entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: date constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Date of the data acquired from the mass spectrometry instrument entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: condition constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: 'Biological condition (ex: disease state) of the cases(patients) from which the aliquots derived.' entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: protocol constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Name of the protocol used to run the experiment entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: analyte constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Experimental metadata describing how an aliquot was processed within a study. ea_cde_id: '' ea_cde_source: '' ea_description: Type of peptide or protein enrichment entity: Aliquot Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: analyte_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Analyte enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biospecimen column: analyte_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Analyte enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biospecimen column: analyte_submitter_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Analyte enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: sample_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Analyte enumeration: '' example_value: '' key: Y reference_type: Analyte references the Sample it is derived from. referenced_entity: Sample type_general: '' - category: Biospecimen column: sample_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Analyte enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: portion_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Analyte enumeration: '' example_value: '' key: Y reference_type: Analyte references the Portion it is derived from. referenced_entity: Portion type_general: '' - category: Biospecimen column: portion_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Analyte enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: analyte_type constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '2513915' ea_cde_source: caDSR ea_description: Text term that represents the kind of molecular specimen analyte. entity: Analyte enumeration: "DNA\r\nEBV Immortalized Normal\r\nFFPE DNA\r\nFFPE RNA\r\nGenomePlex\ \ (Rubicon) Amplified DNA\r\nRepli-G (Qiagen) DNA\r\nRepli-G Pooled (Qiagen) DNA\r\ \nRepli-G X (Qiagen) DNA\r\nRNA\r\nTotal RNA" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: a260_a280_ratio constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '5432595' ea_cde_source: caDSR ea_description: Numeric value that represents the sample ratio of nucleic acid absorbance at 260 nm and 280 nm, used to determine a measure of DNA purity. entity: Analyte enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: amount constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Weight in grams or volume in mL. entity: Analyte enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: analyte_quantity constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: The quantity in micrograms (ug) of the analyte(s) derived from the analyte(s) shipped for sequencing and characterization. entity: Analyte enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: analyte_type_id constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '5432508' ea_cde_source: caDSR ea_description: A single letter code used to identify a type of molecular analyte. entity: Analyte enumeration: "D\r\nE\r\nG\r\nH\r\nR\r\nS\r\nT\r\nW\r\nX\r\nY" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: analyte_volume constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: The volume in microliters (ul) of the aliquot(s) derived from the analyte(s) shipped for sequencing and characterization. entity: Analyte enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: concentration constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '5432594' ea_cde_source: caDSR ea_description: Numeric value that represents the concentration of an analyte or aliquot extracted from the sample or sample portion, measured in milligrams per milliliter. entity: Analyte enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: normal_tumor_genotype_snp_match constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '4588156' ea_cde_source: caDSR ea_description: Text term that represents whether or not the genotype of the normal tumor matches or if the data is not available. entity: Analyte enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported\r\nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: ribosomal_rna_28s_16s_ratio constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '' ea_cde_source: '' ea_description: The 28S/18S ribosomal RNA band ratio used to assess the quality of total RNA. entity: Analyte enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: spectrophotometer_method constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '3008378' ea_cde_source: caDSR ea_description: Name of the method used to determine the concentration of purified nucleic acid within a solution. entity: Analyte enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: well_number constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A liquid bulk product produced according to specified lab protocols, from a sample or analyte, intended for further analysis. ea_cde_id: '5432613' ea_cde_source: caDSR ea_description: Numeric value that represents the the well location within a plate for the analyte or aliquot from the sample. entity: Analyte enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: case_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Case enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Administrative column: case_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Case enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Administrative column: case_submitter_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Case enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: project_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Case enumeration: '' example_value: '' key: Y reference_type: Case references the Project it belongs to. referenced_entity: Project type_general: '' - category: Administrative column: project_submitter_id constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Case enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: gdc_case_id constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Case enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: taxon constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Case enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: pool constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '' ea_cde_source: '' ea_description: Any biospecimen entity where multiple cases, samples or aliquots are combined to produce a reference. Sample pooling is commonly used for determining relative protein abundances in labeling experiments. entity: Case enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: binary - category: Administrative column: status constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Case enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: days_to_lost_to_followup constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '6154721' ea_cde_source: caDSR ea_description: The number of days between the date used for index and to the date the patient was lost to follow-up. entity: Case enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Administrative column: disease_type constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '6161017' ea_cde_source: caDSR ea_description: The text term used to describe the type of malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). entity: Case enumeration: "Acinar Cell Neoplasms\r\nAdenomas and Adenocarcinomas\r\nAdnexal and\ \ Skin Appendage Neoplasms\r\nBasal Cell Neoplasms\r\nBlood Vessel Tumors\r\n\ Chronic Myeloproliferative Disorders\r\nComplex Epithelial Neoplasms\r\nComplex\ \ Mixed and Stromal Neoplasms\r\nCystic, Mucinous and Serous Neoplasms\r\nDuctal\ \ and Lobular Neoplasms\r\nEpithelial Neoplasms, NOS\r\nFibroepithelial Neoplasms\r\ \nFibromatous Neoplasms\r\nGerm Cell Neoplasms\r\nGiant Cell Tumors\r\nGliomas\r\ \nGranular Cell Tumors and Alveolar Soft Part Sarcomas\r\nHodgkin Lymphoma\r\n\ Immunoproliferative Diseases\r\nLeukemias, NOS\r\nLipomatous Neoplasms\r\nLymphatic\ \ Vessel Tumors\r\nLymphoid Leukemias\r\nMalignant Lymphomas, NOS or Diffuse\r\ \nMast Cell Tumors\r\nMature B-Cell Lymphomas\r\nMature T- and NK-Cell Lymphomas\r\ \nMeningiomas\r\nMesonephromas\r\nMesothelial Neoplasms\r\nMiscellaneous Bone\ \ Tumors\r\nMiscellaneous Tumors\r\nMucoepidermoid Neoplasms\r\nMyelodysplastic\ \ Syndromes\r\nMyeloid Leukemias\r\nMyomatous Neoplasms\r\nMyxomatous Neoplasms\r\ \nNeoplasms, NOS\r\nNeoplasms of Histiocytes and Accessory Lymphoid Cells\r\n\ Nerve Sheath Tumors\r\nNeuroepitheliomatous Neoplasms\r\nNevi and Melanomas\r\n\ Odontogenic Tumors\r\nOsseous and Chondromatous Neoplasms\r\nOther Hematologic\ \ Disorders\r\nOther Leukemias\r\nParagangliomas and Glomus Tumors\r\nPlasma Cell\ \ Tumors\r\nPrecursor Cell Lymphoblastic Lymphoma\r\nSoft Tissue Tumors and Sarcomas,\ \ NOS\r\nSpecialized Gonadal Neoplasms\r\nSquamous Cell Neoplasms\r\nSynovial-like\ \ Neoplasms\r\nThymic Epithelial Neoplasms\r\nTransitional Cell Papillomas and\ \ Carcinomas\r\nTrophoblastic neoplasms\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Administrative column: index_date constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '6154722' ea_cde_source: caDSR ea_description: The text term used to describe the reference or anchor date used when for date obfuscation, where a single date is obscured by creating one or more date ranges in relation to this date. entity: Case enumeration: "Diagnosis\r\nFirst Patient Visit\r\nFirst Treatment\r\nInitial Genomic\ \ Sequencing\r\nSample Procurement\r\nStudy Enrollment" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Administrative column: lost_to_followup constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '6161018' ea_cde_source: caDSR ea_description: The yes/no/unknown indicator used to describe whether a patient was unable to be contacted or seen for follow-up information. entity: Case enumeration: "Yes\r\nNo" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Administrative column: primary_site constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: The collection of all data related to a specific subject in the context of a specific project. ea_cde_id: '6161019' ea_cde_source: caDSR ea_description: The text term used to describe the general location of the malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). entity: Case enumeration: "Accessory sinuses\r\nAnus and anal canal\r\nBase of tongue\r\nBladder\r\ \nBones, joints and articular cartilage of limbs\r\nBones, joints and articular\ \ cartilage of other and unspecified sites\r\nBrain\r\nBreast\r\nBronchus and\ \ lung\r\nCervix uteri\r\nColon\r\nConnective, subcutaneous and other soft tissues\r\ \nCorpus uteri\r\nEsophagus\r\nEye and adnexa\r\nFloor of mouth\r\nGallbladder\r\ \nGum\r\nHeart, mediastinum, and pleura\r\nHematopoietic and reticuloendothelial\ \ systems\r\nHypopharynx\r\nKidney\r\nLarynx\r\nLip\r\nLiver and intrahepatic\ \ bile ducts\r\nMeninges\r\nNasal cavity and middle ear\r\nNasopharynx\r\nOropharynx\r\ \nOther and ill-defined digestive organs\r\nOther and ill-defined sites\r\nOther\ \ and ill-defined sites in lip, oral cavity and pharynx\r\nOther and ill-defined\ \ sites within respiratory system and intrathoracic organs\r\nOther and unspecified\ \ female genital organs\r\nOther and unspecified major salivary glands\r\nOther\ \ and unspecified male genital organs\r\nOther and unspecified parts of biliary\ \ tract\r\nOther and unspecified parts of mouth\r\nOther and unspecified parts\ \ of tongue\r\nOther and unspecified urinary organs\r\nOther endocrine glands\ \ and related structures\r\nOvary\r\nPalate\r\nPancreas\r\nParotid gland\r\nPenis\r\ \nPeripheral nerves and autonomic nervous system\r\nPlacenta\r\nProstate gland\r\ \nPyriform sinus\r\nRectosigmoid junction\r\nRectum\r\nRenal pelvis\r\nRetroperitoneum\ \ and peritoneum\r\nSkin\r\nSmall intestine\r\nSpinal cord, cranial nerves, and\ \ other parts of central nervous system\r\nStomach\r\nTestis\r\nThymus\r\nThyroid\ \ gland\r\nTonsil\r\nTrachea\r\nUreter\r\nUterus, NOS\r\nVagina\r\nVulva\r\nUnknown\r\ \nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: demographic_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Demographic enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Clinical column: demographic_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Demographic enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Clinical column: demographic_submitter_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Demographic enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: case_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Demographic enumeration: '' example_value: '' key: Y reference_type: Demographic references the Case it is derived from. referenced_entity: Case type_general: '' - category: Clinical column: case_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Demographic enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: ethnicity constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '2192217' ea_cde_source: caDSR ea_description: An individual's self-described social and cultural grouping, specifically whether an individual describes themselves as Hispanic or Latino. The provided values are based on the categories defined by the U.S. Office of Management and Business and used by the U.S. Census Bureau. entity: Demographic enumeration: 'hispanic or latino not hispanic or latino not reported not allowed to collect' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: gender constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '2200604' ea_cde_source: caDSR ea_description: 'Text designations that identify gender. Gender is described as the assemblage of properties that distinguish people on the basis of their societal roles. [Explanatory Comment 1: Identification of gender is based upon self-report and may come from a form, questionnaire, interview, etc.]' entity: Demographic enumeration: "female\r\nmale\r\nunknown\r\nunspecified\r\nnot reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: race constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '2192199' ea_cde_source: caDSR ea_description: An arbitrary classification of a taxonomic group that is a division of a species. It usually arises as a consequence of geographical isolation within a species and is characterized by shared heredity, physical attributes and behavior, and in the case of humans, by common history, nationality, or geographic distribution. The provided values are based on the categories defined by the U.S. Office of Management and Business and used by the U.S. Census Bureau. entity: Demographic enumeration: "white\r\namerican indian or alaska native\r\nblack or african american\r\ \nasian\r\nnative hawaiian or other pacific islander\r\nother\r\nnot reported\r\ \nnot allowed to collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: age_at_index constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '6028530' ea_cde_source: caDSR ea_description: The patient's age (in years) on the reference or anchor date date used during date obfuscation. entity: Demographic enumeration: "integer\r\nnull" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: cause_of_death constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '2554674' ea_cde_source: caDSR ea_description: Text term to identify the cause of death for a patient. entity: Demographic enumeration: "Cancer Related\r\nCardiovascular Disorder, NOS\r\nEnd-stage Renal\ \ Disease\r\nInfection\r\nNot Cancer Related\r\nRenal Disorder, NOS\r\nSpinal\ \ Muscular Atrophy\r\nSurgical Complications\r\nToxicity\r\nNot Reported\r\nUnknown" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: days_to_birth constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '6154723' ea_cde_source: caDSR ea_description: Number of days between the date used for index and the date from a person's date of birth represented as a calculated negative number of days. entity: Demographic enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: days_to_death constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '6154724' ea_cde_source: caDSR ea_description: Number of days between the date used for index and the date from a person's date of death represented as a calculated number of days. entity: Demographic enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: premature_at_birth constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '6010765' ea_cde_source: caDSR ea_description: The yes/no/unknown indicator used to describe whether the patient was premature (less than 37 weeks gestation) at birth. entity: Demographic enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: vital_status constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '5' ea_cde_source: caDSR ea_description: The survival state of the person registered on the protocol. entity: Demographic enumeration: "Alive\r\nDead\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: weeks_gestation_at_birth constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '2737369' ea_cde_source: caDSR ea_description: Numeric value used to describe the number of weeks starting from the approximate date of the biological mother's last menstrual period and ending with the birth of the patient. entity: Demographic enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Clinical column: year_of_birth constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '2896954' ea_cde_source: caDSR ea_description: Numeric value to represent the calendar year in which an individual was born. entity: Demographic enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: year_of_death constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data for the characterization of the patient by means of segmenting the population (e.g., characterization by age, sex, or race). ea_cde_id: '2897030' ea_cde_source: caDSR ea_description: Numeric value to represent the year of the death of an individual. entity: Demographic enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: diagnosis_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Diagnosis enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Clinical column: diagnosis_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Diagnosis enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Clinical column: diagnosis_submitter_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Diagnosis enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: case_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Diagnosis enumeration: '' example_value: '' key: Y reference_type: Diagnosis references the Case it is derived from. referenced_entity: Case type_general: '' - category: Clinical column: case_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Diagnosis enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: gdc_case_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Diagnosis enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: age_at_diagnosis constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3225640' ea_cde_source: caDSR ea_description: Age at the time of diagnosis expressed in number of days since birth. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: days_to_last_follow_up constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3008273' ea_cde_source: caDSR ea_description: Time interval from the date of last follow up to the date of initial pathologic diagnosis, represented as a calculated number of days. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Clinical column: days_to_last_known_disease_status constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3008273' ea_cde_source: caDSR ea_description: Time interval from the date of last follow up to the date of initial pathologic diagnosis, represented as a calculated number of days. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Clinical column: days_to_recurrence constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6154731' ea_cde_source: caDSR ea_description: Number of days between the date used for index and the date the patient's disease recurred. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Clinical column: last_known_disease_status constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '5424231' ea_cde_source: caDSR ea_description: Text term that describes the last known state or condition of an individual's neoplasm. entity: Diagnosis enumeration: "Distant met recurrence/progression\r\nLoco-regional recurrence/progression\r\ \nBiochemical evidence of disease without structural correlate\r\nTumor free\r\ \nUnknown tumor status\r\nWith tumor\r\nnot reported\r\nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: morphology constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3226275' ea_cde_source: caDSR ea_description: The third edition of the International Classification of Diseases for Oncology, published in 2000 used principally in tumor and cancer registries for coding the site (topography) and the histology (morphology) of neoplasms. The study of the structure of the cells and their arrangement to constitute tissues and, finally, the association among these to form organs. In pathology, the microscopic process of identifying normal and abnormal morphologic characteristics in tissues, by employing various cytochemical and immunocytochemical stains. A system of numbered categories for representation of data. entity: Diagnosis enumeration: '8000/0 8000/1 8000/3 8000/6 8000/9 8001/0 8001/1 8001/3 8002/3 8003/3 8004/3 8005/0 8005/3 8010/0 8010/2 8010/3 8010/6 8010/9 8011/0 8011/3 8012/3 8013/3 8014/3 8015/3 8020/3 8021/3 8022/3 8023/3 8030/3 8031/3 8032/3 8033/3 8034/3 8035/3 8040/0 8040/1 8041/3 8041/34 8042/3 8043/3 8044/3 8045/3 8046/3 8050/0 8050/2 8050/3 8051/0 8051/3 8052/0 8052/2 8052/3 8053/0 8060/0 8070/2 8070/3 8070/33 8070/6 8071/2 8071/3 8072/3 8073/3 8074/3 8075/3 8076/2 8076/3 8077/0 8077/2 8078/3 8080/2 8081/2 8082/3 8083/3 8084/3 8085/3 8086/3 8090/1 8090/3 8091/3 8092/3 8093/3 8094/3 8095/3 8096/0 8097/3 8098/3 8100/0 8101/0 8102/0 8102/3 8103/0 8110/0 8110/3 8120/0 8120/1 8120/2 8120/3 8121/0 8121/1 8121/3 8122/3 8123/3 8124/3 8130/1 8130/2 8130/3 8131/3 8140/0 8140/1 8140/2 8140/3 8140/33 8140/6 8141/3 8142/3 8143/3 8144/3 8145/3 8146/0 8147/0 8147/3 8148/0 8148/2 8149/0 8150/0 8150/1 8150/3 8151/0 8151/3 8152/1 8152/3 8153/1 8153/3 8154/3 8155/1 8155/3 8156/1 8156/3 8158/1 8160/0 8160/3 8161/0 8161/3 8162/3 8163/0 8163/2 8163/3 8170/0 8170/3 8171/3 8172/3 8173/3 8174/3 8175/3 8180/3 8190/0 8190/3 8191/0 8200/0 8200/3 8201/2 8201/3 8202/0 8204/0 8210/0 8210/2 8210/3 8211/0 8211/3 8212/0 8213/0 8213/3 8214/3 8215/3 8220/0 8220/3 8221/0 8221/3 8230/2 8230/3 8231/3 8240/1 8240/3 8241/3 8242/1 8242/3 8243/3 8244/3 8245/1 8245/3 8246/3 8247/3 8248/1 8249/3 8250/1 8250/2 8250/3 8251/0 8251/3 8252/3 8253/3 8254/3 8255/3 8256/3 8257/3 8260/0 8260/3 8261/0 8261/2 8261/3 8262/3 8263/0 8263/2 8263/3 8264/0 8265/3 8270/0 8270/3 8271/0 8272/0 8272/3 8280/0 8280/3 8281/0 8281/3 8290/0 8290/3 8300/0 8300/3 8310/0 8310/3 8311/1 8311/3 8312/3 8313/0 8313/1 8313/3 8314/3 8315/3 8316/3 8317/3 8318/3 8319/3 8320/3 8321/0 8322/0 8322/3 8323/0 8323/3 8324/0 8325/0 8330/0 8330/1 8330/3 8331/3 8332/3 8333/0 8333/3 8334/0 8335/3 8336/0 8337/3 8339/3 8340/3 8341/3 8342/3 8343/2 8343/3 8344/3 8345/3 8346/3 8347/3 8350/3 8360/1 8361/0 8370/0 8370/1 8370/3 8371/0 8372/0 8373/0 8374/0 8375/0 8380/0 8380/1 8380/2 8380/3 8381/0 8381/1 8381/3 8382/3 8383/3 8384/3 8390/0 8390/3 8391/0 8392/0 8400/0 8400/1 8400/3 8401/0 8401/3 8402/0 8402/3 8403/0 8403/3 8404/0 8405/0 8406/0 8407/0 8407/3 8408/0 8408/1 8408/3 8409/0 8409/3 8410/0 8410/3 8413/3 8420/0 8420/3 8430/1 8430/3 8440/0 8440/3 8441/0 8441/2 8441/3 8442/1 8443/0 8444/1 8450/0 8450/3 8451/1 8452/1 8452/3 8453/0 8453/2 8453/3 8454/0 8460/0 8460/2 8460/3 8461/0 8461/3 8462/1 8463/1 8470/0 8470/2 8470/3 8471/0 8471/3 8472/1 8473/1 8474/1 8474/3 8480/0 8480/1 8480/3 8480/6 8481/3 8482/3 8490/3 8490/6 8500/2 8500/3 8501/2 8501/3 8502/3 8503/0 8503/2 8503/3 8504/0 8504/2 8504/3 8505/0 8506/0 8507/2 8507/3 8508/3 8509/2 8509/3 8510/3 8512/3 8513/3 8514/3 8519/2 8520/2 8520/3 8521/1 8521/3 8522/1 8522/2 8522/3 8523/3 8524/3 8525/3 8530/3 8540/3 8541/3 8542/3 8543/3 8550/0 8550/1 8550/3 8551/3 8552/3 8560/0 8560/3 8561/0 8562/3 8570/3 8571/3 8572/3 8573/3 8574/3 8575/3 8576/3 8580/0 8580/1 8580/3 8581/1 8581/3 8582/1 8582/3 8583/1 8583/3 8584/1 8584/3 8585/1 8585/3 8586/3 8587/0 8588/3 8589/3 8590/1 8591/1 8592/1 8593/1 8594/1 8600/0 8600/3 8601/0 8602/0 8610/0 8620/1 8620/3 8621/1 8622/1 8623/1 8630/0 8630/1 8630/3 8631/0 8631/1 8631/3 8632/1 8633/1 8634/1 8634/3 8640/1 8640/3 8641/0 8642/1 8650/0 8650/1 8650/3 8660/0 8670/0 8670/3 8671/0 8680/0 8680/1 8680/3 8681/1 8682/1 8683/0 8690/1 8691/1 8692/1 8693/1 8693/3 8700/0 8700/3 8710/3 8711/0 8711/3 8712/0 8713/0 8714/3 8720/0 8720/2 8720/3 8721/3 8722/0 8722/3 8723/0 8723/3 8725/0 8726/0 8727/0 8728/0 8728/1 8728/3 8730/0 8730/3 8740/0 8740/3 8741/2 8741/3 8742/2 8742/3 8743/3 8744/3 8745/3 8746/3 8750/0 8760/0 8761/0 8761/1 8761/3 8762/1 8770/0 8770/3 8771/0 8771/3 8772/0 8772/3 8773/3 8774/3 8780/0 8780/3 8790/0 8800/0 8800/3 8800/9 8801/3 8802/3 8803/3 8804/3 8805/3 8806/3 8810/0 8810/1 8810/3 8811/0 8811/1 8811/3 8812/0 8812/3 8813/0 8813/3 8814/3 8815/0 8815/1 8815/3 8820/0 8821/1 8822/1 8823/0 8824/0 8824/1 8825/0 8825/1 8825/3 8826/0 8827/1 8830/0 8830/1 8830/3 8831/0 8832/0 8832/3 8833/3 8834/1 8835/1 8836/1 8840/0 8840/3 8841/1 8842/0 8842/3 8850/0 8850/1 8850/3 8851/0 8851/3 8852/0 8852/3 8853/3 8854/0 8854/3 8855/3 8856/0 8857/0 8857/3 8858/3 8860/0 8861/0 8862/0 8870/0 8880/0 8881/0 8890/0 8890/1 8890/3 8891/0 8891/3 8892/0 8893/0 8894/0 8894/3 8895/0 8895/3 8896/3 8897/1 8898/1 8900/0 8900/3 8901/3 8902/3 8903/0 8904/0 8905/0 8910/3 8912/3 8920/3 8921/3 8930/0 8930/3 8931/3 8932/0 8933/3 8934/3 8935/0 8935/1 8935/3 8936/0 8936/1 8936/3 8940/0 8940/3 8941/3 8950/3 8951/3 8959/0 8959/1 8959/3 8960/1 8960/3 8963/3 8964/3 8965/0 8966/0 8967/0 8970/3 8971/3 8972/3 8973/3 8974/1 8975/1 8980/3 8981/3 8982/0 8982/3 8983/0 8983/3 8990/0 8990/1 8990/3 8991/3 9000/0 9000/1 9000/3 9010/0 9011/0 9012/0 9013/0 9014/0 9014/1 9014/3 9015/0 9015/1 9015/3 9016/0 9020/0 9020/1 9020/3 9030/0 9040/0 9040/3 9041/3 9042/3 9043/3 9044/3 9045/3 9050/0 9050/3 9051/0 9051/3 9052/0 9052/3 9053/3 9054/0 9055/0 9055/1 9060/3 9061/3 9062/3 9063/3 9064/2 9064/3 9065/3 9070/3 9071/3 9072/3 9073/1 9080/0 9080/1 9080/3 9081/3 9082/3 9083/3 9084/0 9084/3 9085/3 9086/3 9090/0 9090/3 9091/1 9100/0 9100/1 9100/3 9101/3 9102/3 9103/0 9104/1 9105/3 9110/0 9110/1 9110/3 9120/0 9120/3 9121/0 9122/0 9123/0 9124/3 9125/0 9130/0 9130/1 9130/3 9131/0 9132/0 9133/1 9133/3 9135/1 9136/1 9137/3 9140/3 9141/0 9142/0 9150/0 9150/1 9150/3 9160/0 9161/0 9161/1 9170/0 9170/3 9171/0 9172/0 9173/0 9174/0 9174/1 9175/0 9180/0 9180/3 9181/3 9182/3 9183/3 9184/3 9185/3 9186/3 9187/3 9191/0 9192/3 9193/3 9194/3 9195/3 9200/0 9200/1 9210/0 9210/1 9220/0 9220/1 9220/3 9221/0 9221/3 9230/0 9230/3 9231/3 9240/3 9241/0 9242/3 9243/3 9250/1 9250/3 9251/1 9251/3 9252/0 9252/3 9260/3 9261/3 9262/0 9270/0 9270/1 9270/3 9271/0 9272/0 9273/0 9274/0 9275/0 9280/0 9281/0 9282/0 9290/0 9290/3 9300/0 9301/0 9302/0 9302/3 9310/0 9310/3 9311/0 9312/0 9320/0 9321/0 9322/0 9330/0 9330/3 9340/0 9341/1 9341/3 9342/3 9350/1 9351/1 9352/1 9360/1 9361/1 9362/3 9363/0 9364/3 9365/3 9370/3 9371/3 9372/3 9373/0 9380/3 9381/3 9382/3 9383/1 9384/1 9385/3 9390/0 9390/1 9390/3 9391/3 9392/3 9393/3 9394/1 9395/3 9396/3 9400/3 9401/3 9410/3 9411/3 9412/1 9413/0 9420/3 9421/1 9423/3 9424/3 9425/3 9430/3 9431/1 9432/1 9440/3 9441/3 9442/1 9442/3 9444/1 9445/3 9450/3 9451/3 9460/3 9470/3 9471/3 9472/3 9473/3 9474/3 9475/3 9476/3 9477/3 9478/3 9480/3 9490/0 9490/3 9491/0 9492/0 9493/0 9500/3 9501/0 9501/3 9502/0 9502/3 9503/3 9504/3 9505/1 9505/3 9506/1 9507/0 9508/3 9509/1 9510/0 9510/3 9511/3 9512/3 9513/3 9514/1 9520/3 9521/3 9522/3 9523/3 9530/0 9530/1 9530/3 9531/0 9532/0 9533/0 9534/0 9535/0 9537/0 9538/1 9538/3 9539/1 9539/3 9540/0 9540/1 9540/3 9541/0 9542/3 9550/0 9560/0 9560/1 9560/3 9561/3 9562/0 9570/0 9571/0 9571/3 9580/0 9580/3 9581/3 9582/0 9590/3 9591/3 9596/3 9597/3 9650/3 9651/3 9652/3 9653/3 9654/3 9655/3 9659/3 9661/3 9662/3 9663/3 9664/3 9665/3 9667/3 9670/3 9671/3 9673/3 9675/3 9678/3 9679/3 9680/3 9684/3 9687/3 9688/3 9689/3 9690/3 9691/3 9695/3 9698/3 9699/3 9700/3 9701/3 9702/3 9705/3 9708/3 9709/3 9712/3 9714/3 9716/3 9717/3 9718/3 9719/3 9724/3 9725/3 9726/3 9727/3 9728/3 9729/3 9731/3 9732/3 9733/3 9734/3 9735/3 9737/3 9738/3 9740/1 9740/3 9741/1 9741/3 9742/3 9750/3 9751/1 9751/3 9752/1 9753/1 9754/3 9755/3 9756/3 9757/3 9758/3 9759/3 9760/3 9761/3 9762/3 9764/3 9765/1 9766/1 9767/1 9768/1 9769/1 9800/3 9801/3 9805/3 9806/3 9807/3 9808/3 9809/3 9811/3 9812/3 9813/3 9814/3 9815/3 9816/3 9817/3 9818/3 9820/3 9823/3 9826/3 9827/3 9831/3 9832/3 9833/3 9834/3 9835/3 9836/3 9837/3 9840/3 9860/3 9861/3 9863/3 9865/3 9866/3 9867/3 9869/3 9870/3 9871/3 9872/3 9873/3 9874/3 9875/3 9876/3 9891/3 9895/3 9896/3 9897/3 9898/1 9898/3 9910/3 9911/3 9920/3 9930/3 9931/3 9940/3 9945/3 9946/3 9948/3 9950/3 9960/3 9961/3 9962/3 9963/3 9964/3 9965/3 9966/3 9967/3 9970/1 9971/1 9971/3 9975/3 9980/3 9982/3 9983/3 9984/3 9985/3 9986/3 9987/3 9989/3 9991/3 9992/3 Unknown' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: primary_diagnosis constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6161032' ea_cde_source: caDSR ea_description: Text term used to describe the patient's histologic diagnosis, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). entity: Diagnosis enumeration: "Abdominal desmoid\r\nAbdominal fibromatosis\r\nAchromic nevus\r\n\ Acidophil adenocarcinoma\r\nAcidophil adenoma\r\nAcidophil carcinoma\r\nAcinar\ \ adenocarcinoma\r\nAcinar adenocarcinoma, sarcomatoid\r\nAcinar adenoma\r\nAcinar\ \ carcinoma\r\nAcinar cell adenoma\r\nAcinar cell carcinoma\r\nAcinar cell cystadenocarcinoma\r\ \nAcinar cell tumor\r\nAcinic cell adenocarcinoma\r\nAcinic cell adenoma\r\nAcinic\ \ cell tumor\r\nAcoustic neuroma\r\nAcquired cystic disease-associated renal cell\ \ carcinoma (RCC)\r\nAcquired tufted hemangioma\r\nAcral lentiginous melanoma,\ \ malignant\r\nACTH-producing tumor\r\nAcute basophilic leukemia\r\nAcute bilineal\ \ leukemia\r\nAcute biphenotypic leukemia\r\nAcute erythremia\r\nAcute erythremic\ \ myelosis\r\nAcute erythroid leukemia\r\nAcute granulocytic leukemia\r\nAcute\ \ leukemia, Burkitt type\r\nAcute leukemia, NOS\r\nAcute lymphatic leukemia\r\n\ Acute lymphoblastic leukemia-lymphoma, NOS\r\nAcute lymphoblastic leukemia, L2\ \ type, NOS\r\nAcute lymphoblastic leukemia, mature B-cell type\r\nAcute lymphoblastic\ \ leukemia, NOS\r\nAcute lymphoblastic leukemia, precursor cell type\r\nAcute\ \ lymphocytic leukemia\r\nAcute lymphoid leukemia\r\nAcute megakaryoblastic leukemia\r\ \nAcute mixed lineage leukemia\r\nAcute monoblastic and monocytic leukemia\r\n\ Acute monoblastic leukemia\r\nAcute monocytic leukemia\r\nAcute myeloblastic leukemia\r\ \nAcute myelocytic leukemia\r\nAcute myelofibrosis\r\nAcute myelogenous leukemia\r\ \nAcute myeloid leukemia, t(8;21)(q22;q22)\r\nAcute myeloid leukemia (megakaryoblastic)\ \ with t(1;22)(p13;q13); RBM15-MKL1\r\nAcute myeloid leukemia with abnormal marrow\ \ eosinophils (includes all variants)\r\nAcute myeloid leukemia with inv(3)(q21q26.2)\ \ or t(3;3)(q21;q26.2); RPN1-EVI1\r\nAcute myeloid leukemia with maturation\r\n\ Acute myeloid leukemia with multilineage dysplasia\r\nAcute myeloid leukemia with\ \ mutated CEBPA\r\nAcute myeloid leukemia with mutated NPM1\r\nAcute myeloid leukemia\ \ with myelodysplasia-related changes\r\nAcute myeloid leukemia with prior myelodysplastic\ \ syndrome\r\nAcute myeloid leukemia with t(6;9)(p23;q34); DEK-NUP214\r\nAcute\ \ myeloid leukemia with t(8;21)(q22;q22); RUNX1-RUNX1T1\r\nAcute myeloid leukemia\ \ with t(9;11)(p22;q23); MLLT3-MLL\r\nAcute myeloid leukemia without maturation\r\ \nAcute myeloid leukemia without prior myelodysplastic syndrome\r\nAcute myeloid\ \ leukemia, AML1(CBF-alpha)/ETO\r\nAcute myeloid leukemia, CBF-beta/MYH11\r\n\ Acute myeloid leukemia, inv(16)(p13;q22)\r\nAcute myeloid leukemia, M6 type\r\n\ Acute myeloid leukemia, minimal differentiation\r\nAcute myeloid leukemia, MLL\r\ \nAcute myeloid leukemia, NOS\r\nAcute myeloid leukemia, PML/RAR-alpha\r\nAcute\ \ myeloid leukemia, t(15:17)(g22;q11-12)\r\nAcute myeloid leukemia, t(16;16)(p\ \ 13;q 11)\r\nAcute myelomonocytic leukemia\r\nAcute myelomonocytic leukemia with\ \ abnormal eosinophils\r\nAcute myelosclerosis, NOS\r\nAcute myloid leukemia,\ \ 11q23 abnormalities\r\nAcute non-lymphocytic leukemia\r\nAcute panmyelosis with\ \ myelofibrosis\r\nAcute panmyelosis, NOS\r\nAcute progressive histiocytosis X\r\ \nAcute promyelocytic leukemia, PML-RAR-alpha\r\nAcute promyelocytic leukemia,\ \ t(15;17)(q22;q11-12)\r\nAcute promyelocytic leukemia, NOS\r\nAdamantinoma of\ \ long bones\r\nAdamantinoma, malignant\r\nAdamantinoma, NOS\r\nAdenoacanthoma\r\ \nAdenoameloblastoma\r\nAdenocarcinoid tumor\r\nAdenocarcinoma admixed with neuroendocrine\ \ carcinoma\r\nAdenocarcinoma combined with other types of carcinoma\r\nAdenocarcinoma\ \ in a polyp, NOS\r\nAdenocarcinoma in adenomatous polyp\r\nAdenocarcinoma in\ \ adenomatous polyposis coli\r\nAdenocarcinoma in multiple adenomatous polyps\r\ \nAdenocarcinoma in polypoid adenoma\r\nAdenocarcinoma in situ in a polyp, NOS\r\ \nAdenocarcinoma in situ in adenomatous polyp\r\nAdenocarcinoma in situ in polypoid\ \ adenoma\r\nAdenocarcinoma in situ in tubular adenoma\r\nAdenocarcinoma in situ\ \ in tubulovillous adenoma\r\nAdenocarcinoma in situ in villous adenoma\r\nAdenocarcinoma\ \ in situ, mucinous\r\nAdenocarcinoma in situ, non-mucinous\r\nAdenocarcinoma\ \ in situ, NOS\r\nAdenocarcinoma in tubolovillous adenoma\r\nAdenocarcinoma in\ \ tubular adenoma\r\nAdenocarcinoma in villous adenoma\r\nAdenocarcinoma of anal\ \ ducts\r\nAdenocarcinoma of anal glands\r\nAdenocarcinoma of rete ovarii\r\n\ Adenocarcinoma with apocrine metaplasia\r\nAdenocarcinoma with cartilaginous and\ \ osseous metaplasia\r\nAdenocarcinoma with cartilaginous metaplasia\r\nAdenocarcinoma\ \ with mixed subtypes\r\nAdenocarcinoma with neuroendocrine differentiation\r\n\ Adenocarcinoma with osseous metaplasia\r\nAdenocarcinoma with spindle cell metaplasia\r\ \nAdenocarcinoma with squamous metaplasia\r\nAdenocarcinoma, cribriform comedo-type\r\ \nAdenocarcinoma, cylindroid\r\nAdenocarcinoma, diffuse type\r\nAdenocarcinoma,\ \ endocervical type\r\nAdenocarcinoma, intestinal type\r\nAdenocarcinoma, metastatic,\ \ NOS\r\nAdenocarcinoma, NOS\r\nAdenocarcinoma, pancreatobiliary type\r\nAdenocystic\ \ carcinoma\r\nAdenofibroma, NOS\r\nAdenoid basal carcinoma\r\nAdenoid cystic\ \ carcinoma\r\nAdenolipoma\r\nAdenolymphoma\r\nAdenoma of nipple\r\nAdenoma, NOS\r\ \nAdenomatoid odontogenic tumor\r\nAdenomatoid tumor, NOS\r\nAdenomatosis, NOS\r\ \nAdenomatous polyp, NOS\r\nAdenomatous polyposis coli\r\nAdenomyoepithelioma\r\ \nAdenomyoepithelioma with carcinoma\r\nAdenomyoma\r\nAdenosarcoma\r\nAdenosquamous\ \ carcinoma\r\nAdnexal carcinoma\r\nAdnexal tumor, benign\r\nAdrenal cortical\ \ adenocarcinoma\r\nAdrenal cortical adenoma, clear cell\r\nAdrenal cortical adenoma,\ \ compact cell\r\nAdrenal cortical adenoma, glomerulosa cell\r\nAdrenal cortical\ \ adenoma, mixed cell\r\nAdrenal cortical adenoma, NOS\r\nAdrenal cortical adenoma,\ \ pigmented\r\nAdrenal cortical carcinoma\r\nAdrenal cortical tumor, benign\r\n\ Adrenal cortical tumor, malignant\r\nAdrenal cortical tumor, NOS\r\nAdrenal medullary\ \ paraganglioma\r\nAdrenal medullary paraganglioma, malignant\r\nAdrenal rest\ \ tumor\r\nAdult cystic teratoma\r\nAdult granulosa cell tumor\r\nAdult rhabdomyoma\r\ \nAdult T-cell leukemia\r\nAdult T-cell leukemia/lymphoma (HTLV-1 positive) (includes\ \ all variants)\r\nAdult T-cell lymphoma\r\nAdult T-cell lymphoma/leukemia\r\n\ Adult teratoma, NOS\r\nAggressive angiomyxoma\r\nAggressive digital papillary\ \ adenoma\r\nAggressive fibromatosis\r\nAggressive NK-cell leukemia\r\nAggressive\ \ osteoblastoma\r\nAggressive systemic mastocytosis\r\nAgnogenic myeloid metaplasia\r\ \nAIN III\r\nAleukemic granulocytic leukemia\r\nAleukemic leukemia, NOS\r\nAleukemic\ \ lymphatic leukemia\r\nAleukemic lymphocytic leukemia\r\nAleukemic lymphoid leukemia\r\ \nAleukemic monocytic leukemia\r\nAleukemic myelogenous leukemia\r\nAleukemic\ \ myeloid leukemia\r\nALK positive large B-cell lymphoma\r\nAlpha cell tumor,\ \ malignant\r\nAlpha cell tumor, NOS\r\nAlpha heavy chain disease\r\nAlveolar\ \ adenocarcinoma\r\nAlveolar adenoma\r\nAlveolar carcinoma\r\nAlveolar cell carcinoma\r\ \nAlveolar rhabdomyosarcoma\r\nAlveolar soft part sarcoma\r\nAmelanotic melanoma\r\ \nAmeloblastic carcinoma\r\nAmeloblastic fibro-odontoma\r\nAmeloblastic fibro-odontosarcoma\r\ \nAmeloblastic fibrodentinoma\r\nAmeloblastic fibrodentinosarcoma\r\nAmeloblastic\ \ fibroma\r\nAmeloblastic fibrosarcoma\r\nAmeloblastic odontosarcoma\r\nAmeloblastic\ \ sarcoma\r\nAmeloblastoma, malignant\r\nAmeloblastoma, NOS\r\nAML M6\r\nAnal\ \ intraepithelial neoplasia, grade III\r\nAnal intraepithelial neoplasia, low\ \ grade\r\nAnaplastic astrocytoma, IDH-mutant\r\nAnaplastic astrocytoma, IDH-wildtype\r\ \nAnaplastic large B-cell lymphoma\r\nAnaplastic large cell lymphoma, ALK negative\r\ \nAnaplastic large cell lymphoma, ALK positive\r\nAnaplastic large cell lymphoma,\ \ CD30+\r\nAnaplastic large cell lymphoma, NOS\r\nAnaplastic large cell lymphoma,\ \ T cell and Null cell type\r\nAnaplastic medulloblastoma\r\nAnaplastic oligoastrocytoma\r\ \nAnaplastic oligodendroglioma, IDH-mutant and 1p/19q-codeleted\r\nAnaplastic\ \ pleomorphic xanthroastrocytoma\r\nAncient schwannoma\r\nAndroblastoma, benign\r\ \nAndroblastoma, malignant\r\nAndroblastoma, NOS\r\nAngioblastic meningioma\r\n\ Angioblastoma\r\nAngiocentric glioma\r\nAngiocentric immunoproliferative lesion\r\ \nAngiocentric T-cell lymphoma\r\nAngioendothelioma\r\nAngioendotheliomatosis\r\ \nAngiofibroma, NOS\r\nAngioimmunoblastic lymphadenopathy\r\nAngioimmunoblastic\ \ lymphoma\r\nAngioimmunoblastic T-cell lymphoma\r\nAngiokeratoma\r\nAngioleiomyoma\r\ \nAngiolipoma, NOS\r\nAngioma, NOS\r\nAngiomatoid fibrous histiocytoma\r\nAngiomatous\ \ meningioma\r\nAngiomyofibroblastoma\r\nAngiomyolipoma\r\nAngiomyoma\r\nAngiomyosarcoma\r\ \nAngiomyxoma\r\nAngiosarcoma\r\nAngiotropic lymphoma\r\nAortic body paraganglioma\r\ \nAortic body tumor\r\nAorticopulmonary paraganglioma\r\nApocrine adenocarcinoma\r\ \nApocrine adenoma\r\nApocrine cystadenoma\r\nApudoma\r\nArgentaffinoma, malignant\r\ \nArgentaffinoma, NOS\r\nArrhenoblastoma, benign\r\nArrhenoblastoma, malignant\r\ \nArrhenoblastoma, NOS\r\nArteriovenous hemangioma\r\nAskin tumor\r\nAstroblastoma\r\ \nAstrocytic glioma\r\nAstrocytoma, anaplastic\r\nAstrocytoma, low grade\r\nAstrocytoma,\ \ NOS\r\nAstroglioma\r\nAtypical adenoma\r\nAtypical carcinoid tumor\r\nAtypical\ \ choroid plexus papilloma\r\nAtypical chronic myeloid leukemia, BCR/ABL negative\r\ \nAtypical chronic myeloid leukemia, Philadelphia chromosome (Ph1) negative\r\n\ Atypical fibrous histiocytoma\r\nAtypical fibroxanthoma\r\nAtypical follicular\ \ adenoma\r\nAtypical hyperplasia/Endometrioid intraepithelial neoplasm\r\nAtypical\ \ leiomyoma\r\nAtypical lipoma\r\nAtypical medullary carcinoma\r\nAtypical meningioma\r\ \nAtypical polypoid adenomyoma\r\nAtypical proliferating clear cell tumor\r\n\ Atypical proliferating serous tumor\r\nAtypical proliferative endometrioid tumor\r\ \nAtypical proliferative mucinous tumor\r\nAtypical proliferative papillary serous\ \ tumor\r\nAtypical teratoid/rhabdoid tumor" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: progression_or_recurrence constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3121376' ea_cde_source: caDSR ea_description: Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment. entity: Diagnosis enumeration: "yes\r\nno\r\nunknown\r\nnot reported\r\nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: site_of_resection_or_biopsy constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6161034' ea_cde_source: caDSR ea_description: The text term used to describe the anatomic site of origin, of the patient's malignant disease, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). entity: Diagnosis enumeration: "Abdomen, NOS\r\nAbdominal esophagus\r\nAccessory sinus, NOS\r\nAcoustic\ \ nerve\r\nAdrenal gland, NOS\r\nAmpulla of Vater\r\nAnal canal\r\nAnterior 2/3\ \ of tongue, NOS\r\nAnterior floor of mouth\r\nAnterior mediastinum\r\nAnterior\ \ surface of epiglottis\r\nAnterior wall of bladder\r\nAnterior wall of nasopharynx\r\ \nAnus, NOS\r\nAortic body and other paraganglia\r\nAppendix\r\nAscending colon\r\ \nAutonomic nervous system, NOS\r\nAxillary tail of breast\r\nBase of tongue,\ \ NOS\r\nBladder neck\r\nBladder, NOS\r\nBlood\r\nBody of pancreas\r\nBody of\ \ penis\r\nBody of stomach\r\nBone marrow\r\nBone of limb, NOS\r\nBone, NOS\r\n\ Bones of skull and face and associated joints\r\nBorder of tongue\r\nBrain stem\r\ \nBrain, NOS\r\nBranchial cleft\r\nBreast, NOS\r\nBroad ligament\r\nCardia, NOS\r\ \nCarotid body\r\nCauda equina\r\nCecum\r\nCentral portion of breast\r\nCerebellum,\ \ NOS\r\nCerebral meninges\r\nCerebrum\r\nCervical esophagus\r\nCervix uteri\r\ \nChoroid\r\nCiliary body\r\nCloacogenic zone\r\nColon, NOS\r\nCommissure of lip\r\ \nConjunctiva\r\nConnective, subcutaneous and other soft tissues of abdomen\r\n\ Connective, subcutaneous and other soft tissues of head, face, and neck\r\nConnective,\ \ subcutaneous and other soft tissues of lower limb and hip\r\nConnective, subcutaneous\ \ and other soft tissues of pelvis\r\nConnective, subcutaneous and other soft\ \ tissues of thorax\r\nConnective, subcutaneous and other soft tissues of trunk,\ \ NOS\r\nConnective, subcutaneous and other soft tissues of upper limb and shoulder\r\ \nConnective, subcutaneous and other soft tissues, NOS\r\nCornea, NOS\r\nCorpus\ \ uteri\r\nCortex of adrenal gland\r\nCranial nerve, NOS\r\nCraniopharyngeal duct\r\ \nDescended testis\r\nDescending colon\r\nDome of bladder\r\nDorsal surface of\ \ tongue, NOS\r\nDuodenum\r\nEndocervix\r\nEndocrine gland, NOS\r\nEndometrium\r\ \nEpididymis\r\nEsophagus, NOS\r\nEthmoid sinus\r\nExocervix\r\nExternal ear\r\ \nExternal lip, NOS\r\nExternal lower lip\r\nExternal upper lip\r\nExtrahepatic\ \ bile duct\r\nEye, NOS\r\nEyelid\r\nFallopian tube\r\nFemale genital tract, NOS\r\ \nFloor of mouth, NOS\r\nFrontal lobe\r\nFrontal sinus\r\nFundus of stomach\r\n\ Fundus uteri\r\nGallbladder\r\nGastric antrum\r\nGastrointestinal tract, NOS\r\ \nGlans penis\r\nGlottis\r\nGreater curvature of stomach, NOS\r\nGum, NOS\r\n\ Hard palate\r\nHead of pancreas\r\nHead, face or neck, NOS\r\nHeart\r\nHematopoietic\ \ system, NOS\r\nHepatic flexure of colon\r\nHypopharyngeal aspect of aryepiglottic\ \ fold\r\nHypopharynx, NOS\r\nIleum\r\nIll-defined sites within respiratory system\r\ \nIntestinal tract, NOS\r\nIntra-abdominal lymph nodes\r\nIntrahepatic bile duct\r\ \nIntrathoracic lymph nodes\r\nIslets of Langerhans\r\nIsthmus uteri\r\nJejunum\r\ \nKidney, NOS\r\nLabium majus\r\nLabium minus\r\nLacrimal gland\r\nLaryngeal cartilage\r\ \nLarynx, NOS\r\nLateral floor of mouth\r\nLateral wall of bladder\r\nLateral\ \ wall of nasopharynx\r\nLateral wall of oropharynx\r\nLesser curvature of stomach,\ \ NOS\r\nLingual tonsil\r\nLip, NOS\r\nLiver\r\nLong bones of lower limb and associated\ \ joints\r\nLong bones of upper limb, scapula and associated joints\r\nLower gum\r\ \nLower limb, NOS\r\nLower lobe, lung\r\nLower third of esophagus\r\nLower-inner\ \ quadrant of breast\r\nLower-outer quadrant of breast\r\nLung, NOS\r\nLymph node,\ \ NOS\r\nLymph nodes of axilla or arm\r\nLymph nodes of head, face and neck\r\n\ Lymph nodes of inguinal region or leg\r\nLymph nodes of multiple regions\r\nMain\ \ bronchus\r\nMajor salivary gland, NOS\r\nMale genital organs, NOS\r\nMandible\r\ \nMaxillary sinus\r\nMeckel diverticulum\r\nMediastinum, NOS\r\nMedulla of adrenal\ \ gland\r\nMeninges, NOS\r\nMiddle ear\r\nMiddle lobe, lung\r\nMiddle third of\ \ esophagus\r\nMouth, NOS\r\nMucosa of lip, NOS\r\nMucosa of lower lip\r\nMucosa\ \ of upper lip\r\nMyometrium\r\nNasal cavity\r\nNasopharynx, NOS\r\nNervous system,\ \ NOS\r\nNipple\r\nOccipital lobe\r\nOlfactory nerve\r\nOptic nerve\r\nOrbit,\ \ NOS\r\nOropharynx, NOS\r\nOther ill-defined sites\r\nOther specified parts of\ \ female genital organs\r\nOther specified parts of male genital organs\r\nOther\ \ specified parts of pancreas\r\nOvary\r\nOverlapping lesion of accessory sinuses\r\ \nOverlapping lesion of bladder\r\nOverlapping lesion of bones, joints and articular\ \ cartilage\r\nOverlapping lesion of bones, joints and articular cartilage of\ \ limbs\r\nOverlapping lesion of brain\r\nOverlapping lesion of brain and central\ \ nervous system\r\nOverlapping lesion of breast\r\nOverlapping lesion of cervix\ \ uteri\r\nOverlapping lesion of colon\r\nOverlapping lesion of connective, subcutaneous\ \ and other soft tissues\r\nOverlapping lesion of corpus uteri\r\nOverlapping\ \ lesion of digestive system\r\nOverlapping lesion of endocrine glands and related\ \ structures\r\nOverlapping lesion of esophagus\r\nOverlapping lesion of eye and\ \ adnexa\r\nOverlapping lesion of female genital organs\r\nOverlapping lesion\ \ of floor of mouth\r\nOverlapping lesion of heart, mediastinum and pleura\r\n\ Overlapping lesion of hypopharynx\r\nOverlapping lesion of ill-defined sites\r\ \nOverlapping lesion of larynx\r\nOverlapping lesion of lip\r\nOverlapping lesion\ \ of lip, oral cavity and pharynx\r\nOverlapping lesion of lung\r\nOverlapping\ \ lesion of major salivary glands\r\nOverlapping lesion of male genital organs\r\ \nOverlapping lesion of nasopharynx\r\nOverlapping lesion of other and unspecified\ \ parts of mouth\r\nOverlapping lesion of palate\r\nOverlapping lesion of pancreas\r\ \nOverlapping lesion of penis\r\nOverlapping lesion of peripheral nerves and autonomic\ \ nervous system\r\nOverlapping lesion of rectum, anus and anal canal\r\nOverlapping\ \ lesion of respiratory system and intrathoracic organs\r\nOverlapping lesion\ \ of retroperitoneum and peritoneum\r\nOverlapping lesion of skin\r\nOverlapping\ \ lesion of small intestine\r\nOverlapping lesion of stomach\r\nOverlapping lesion\ \ of tongue\r\nOverlapping lesion of tonsil\r\nOverlapping lesion of urinary organs\r\ \nOverlapping lesion of vulva\r\nOverlapping lesions of oropharynx\r\nPalate,\ \ NOS\r\nPancreas, NOS\r\nPancreatic duct\r\nParametrium\r\nParathyroid gland\r\ \nParaurethral gland\r\nParietal lobe\r\nParotid gland\r\nPelvic bones, sacrum,\ \ coccyx and associated joints\r\nPelvic lymph nodes\r\nPelvis, NOS\r\nPenis,\ \ NOS\r\nPeripheral nerves and autonomic nervous system of abdomen\r\nPeripheral\ \ nerves and autonomic nervous system of head, face, and neck\r\nPeripheral nerves\ \ and autonomic nervous system of lower limb and hip\r\nPeripheral nerves and\ \ autonomic nervous system of pelvis\r\nPeripheral nerves and autonomic nervous\ \ system of thorax\r\nPeripheral nerves and autonomic nervous system of trunk,\ \ NOS\r\nPeripheral nerves and autonomic nervous system of upper limb and shoulder\r\ \nPeritoneum, NOS\r\nPharynx, NOS\r\nPineal gland\r\nPituitary gland\r\nPlacenta\r\ \nPleura, NOS\r\nPostcricoid region\r\nPosterior mediastinum\r\nPosterior wall\ \ of bladder\r\nPosterior wall of hypopharynx\r\nPosterior wall of nasopharynx\r\ \nPosterior wall of oropharynx\r\nPrepuce\r\nProstate gland\r\nPylorus\r\nPyriform\ \ sinus\r\nRectosigmoid junction\r\nRectum, NOS\r\nRenal pelvis\r\nReticuloendothelial\ \ system, NOS\r\nRetina\r\nRetromolar area\r\nRetroperitoneum\r\nRib, sternum,\ \ clavicle and associated joints\r\nRound ligament\r\nScrotum, NOS\r\nShort bones\ \ of lower limb and associated joints\r\nShort bones of upper limb and associated\ \ joints\r\nSigmoid colon\r\nSkin of lip, NOS\r\nSkin of lower limb and hip\r\n\ Skin of other and unspecified parts of face\r\nSkin of scalp and neck\r\nSkin\ \ of trunk\r\nSkin of upper limb and shoulder\r\nSkin, NOS\r\nSmall intestine,\ \ NOS\r\nSoft palate, NOS\r\nSpecified parts of peritoneum\r\nSpermatic cord\r\ \nSphenoid sinus\r\nSpinal cord\r\nSpinal meninges\r\nSpleen\r\nSplenic flexure\ \ of colon\r\nStomach, NOS\r\nSubglottis\r\nSublingual gland\r\nSubmandibular\ \ gland\r\nSuperior wall of nasopharynx\r\nSupraglottis\r\nTail of pancreas\r\n\ Temporal lobe\r\nTestis, NOS\r\nThoracic esophagus\r\nThorax, NOS\r\nThymus\r\n\ Thyroid gland\r\nTongue, NOS\r\nTonsil, NOS\r\nTonsillar fossa\r\nTonsillar pillar\r\ \nTrachea\r\nTransverse colon\r\nTrigone of bladder\r\nUndescended testis\r\n\ Unknown primary site\r\nUpper gum\r\nUpper limb, NOS\r\nUpper lobe, lung\r\nUpper\ \ respiratory tract, NOS\r\nUpper third of esophagus\r\nUpper-inner quadrant of\ \ breast\r\nUpper-outer quadrant of breast\r\nUrachus\r\nUreter\r\nUreteric orifice\r\ \nUrethra\r\nUrinary system, NOS\r\nUterine adnexa\r\nUterus, NOS\r\nUvula\r\n\ Vagina, NOS\r\nVallecula\r\nVentral surface of tongue, NOS\r\nVentricle, NOS\r\ \nVertebral column\r\nVestibule of mouth\r\nVulva, NOS\r\nWaldeyer ring\r\nBiliary\ \ tract, NOS\r\nCheek mucosa\r\nClitoris\r\nOverlapping lesion of biliary tract\r\ \nUnknown" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: tissue_or_organ_of_origin constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6161035' ea_cde_source: caDSR ea_description: The text term used to describe the anatomic site of origin, of the patient's malignant disease, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). entity: Diagnosis enumeration: "Abdomen, NOS\r\nAbdominal esophagus\r\nAccessory sinus, NOS\r\nAcoustic\ \ nerve\r\nAdrenal gland, NOS\r\nAmpulla of Vater\r\nAnal canal\r\nAnterior 2/3\ \ of tongue, NOS\r\nAnterior floor of mouth\r\nAnterior mediastinum\r\nAnterior\ \ surface of epiglottis\r\nAnterior wall of bladder\r\nAnterior wall of nasopharynx\r\ \nAnus, NOS\r\nAortic body and other paraganglia\r\nAppendix\r\nAscending colon\r\ \nAutonomic nervous system, NOS\r\nAxillary tail of breast\r\nBase of tongue,\ \ NOS\r\nBladder neck\r\nBladder, NOS\r\nBlood\r\nBody of pancreas\r\nBody of\ \ penis\r\nBody of stomach\r\nBone marrow\r\nBone of limb, NOS\r\nBone, NOS\r\n\ Bones of skull and face and associated joints\r\nBorder of tongue\r\nBrain stem\r\ \nBrain, NOS\r\nBranchial cleft\r\nBreast, NOS\r\nBroad ligament\r\nCardia, NOS\r\ \nCarotid body\r\nCauda equina\r\nCecum\r\nCentral portion of breast\r\nCerebellum,\ \ NOS\r\nCerebral meninges\r\nCerebrum\r\nCervical esophagus\r\nCervix uteri\r\ \nChoroid\r\nCiliary body\r\nCloacogenic zone\r\nColon, NOS\r\nCommissure of lip\r\ \nConjunctiva\r\nConnective, subcutaneous and other soft tissues of abdomen\r\n\ Connective, subcutaneous and other soft tissues of head, face, and neck\r\nConnective,\ \ subcutaneous and other soft tissues of lower limb and hip\r\nConnective, subcutaneous\ \ and other soft tissues of pelvis\r\nConnective, subcutaneous and other soft\ \ tissues of thorax\r\nConnective, subcutaneous and other soft tissues of trunk,\ \ NOS\r\nConnective, subcutaneous and other soft tissues of upper limb and shoulder\r\ \nConnective, subcutaneous and other soft tissues, NOS\r\nCornea, NOS\r\nCorpus\ \ uteri\r\nCortex of adrenal gland\r\nCranial nerve, NOS\r\nCraniopharyngeal duct\r\ \nDescended testis\r\nDescending colon\r\nDome of bladder\r\nDorsal surface of\ \ tongue, NOS\r\nDuodenum\r\nEndocervix\r\nEndocrine gland, NOS\r\nEndometrium\r\ \nEpididymis\r\nEsophagus, NOS\r\nEthmoid sinus\r\nExocervix\r\nExternal ear\r\ \nExternal lip, NOS\r\nExternal lower lip\r\nExternal upper lip\r\nExtrahepatic\ \ bile duct\r\nEye, NOS\r\nEyelid\r\nFallopian tube\r\nFemale genital tract, NOS\r\ \nFloor of mouth, NOS\r\nFrontal lobe\r\nFrontal sinus\r\nFundus of stomach\r\n\ Fundus uteri\r\nGallbladder\r\nGastric antrum\r\nGastrointestinal tract, NOS\r\ \nGlans penis\r\nGlottis\r\nGreater curvature of stomach, NOS\r\nGum, NOS\r\n\ Hard palate\r\nHead of pancreas\r\nHead, face or neck, NOS\r\nHeart\r\nHematopoietic\ \ system, NOS\r\nHepatic flexure of colon\r\nHypopharyngeal aspect of aryepiglottic\ \ fold\r\nHypopharynx, NOS\r\nIleum\r\nIll-defined sites within respiratory system\r\ \nIntestinal tract, NOS\r\nIntra-abdominal lymph nodes\r\nIntrahepatic bile duct\r\ \nIntrathoracic lymph nodes\r\nIslets of Langerhans\r\nIsthmus uteri\r\nJejunum\r\ \nKidney, NOS\r\nLabium majus\r\nLabium minus\r\nLacrimal gland\r\nLaryngeal cartilage\r\ \nLarynx, NOS\r\nLateral floor of mouth\r\nLateral wall of bladder\r\nLateral\ \ wall of nasopharynx\r\nLateral wall of oropharynx\r\nLesser curvature of stomach,\ \ NOS\r\nLingual tonsil\r\nLip, NOS\r\nLiver\r\nLong bones of lower limb and associated\ \ joints\r\nLong bones of upper limb, scapula and associated joints\r\nLower gum\r\ \nLower limb, NOS\r\nLower lobe, lung\r\nLower third of esophagus\r\nLower-inner\ \ quadrant of breast\r\nLower-outer quadrant of breast\r\nLung, NOS\r\nLymph node,\ \ NOS\r\nLymph nodes of axilla or arm\r\nLymph nodes of head, face and neck\r\n\ Lymph nodes of inguinal region or leg\r\nLymph nodes of multiple regions\r\nMain\ \ bronchus\r\nMajor salivary gland, NOS\r\nMale genital organs, NOS\r\nMandible\r\ \nMaxillary sinus\r\nMeckel diverticulum\r\nMediastinum, NOS\r\nMedulla of adrenal\ \ gland\r\nMeninges, NOS\r\nMiddle ear\r\nMiddle lobe, lung\r\nMiddle third of\ \ esophagus\r\nMouth, NOS\r\nMucosa of lip, NOS\r\nMucosa of lower lip\r\nMucosa\ \ of upper lip\r\nMyometrium\r\nNasal cavity\r\nNasopharynx, NOS\r\nNervous system,\ \ NOS\r\nNipple\r\nOccipital lobe\r\nOlfactory nerve\r\nOptic nerve\r\nOrbit,\ \ NOS\r\nOropharynx, NOS\r\nOther ill-defined sites\r\nOther specified parts of\ \ female genital organs\r\nOther specified parts of male genital organs\r\nOther\ \ specified parts of pancreas\r\nOvary\r\nOverlapping lesion of accessory sinuses\r\ \nOverlapping lesion of bladder\r\nOverlapping lesion of bones, joints and articular\ \ cartilage\r\nOverlapping lesion of bones, joints and articular cartilage of\ \ limbs\r\nOverlapping lesion of brain\r\nOverlapping lesion of brain and central\ \ nervous system\r\nOverlapping lesion of breast\r\nOverlapping lesion of cervix\ \ uteri\r\nOverlapping lesion of colon\r\nOverlapping lesion of connective, subcutaneous\ \ and other soft tissues\r\nOverlapping lesion of corpus uteri\r\nOverlapping\ \ lesion of digestive system\r\nOverlapping lesion of endocrine glands and related\ \ structures\r\nOverlapping lesion of esophagus\r\nOverlapping lesion of eye and\ \ adnexa\r\nOverlapping lesion of female genital organs\r\nOverlapping lesion\ \ of floor of mouth\r\nOverlapping lesion of heart, mediastinum and pleura\r\n\ Overlapping lesion of hypopharynx\r\nOverlapping lesion of ill-defined sites\r\ \nOverlapping lesion of larynx\r\nOverlapping lesion of lip\r\nOverlapping lesion\ \ of lip, oral cavity and pharynx\r\nOverlapping lesion of lung\r\nOverlapping\ \ lesion of major salivary glands\r\nOverlapping lesion of male genital organs\r\ \nOverlapping lesion of nasopharynx\r\nOverlapping lesion of other and unspecified\ \ parts of mouth\r\nOverlapping lesion of palate\r\nOverlapping lesion of pancreas\r\ \nOverlapping lesion of penis\r\nOverlapping lesion of peripheral nerves and autonomic\ \ nervous system\r\nOverlapping lesion of rectum, anus and anal canal\r\nOverlapping\ \ lesion of respiratory system and intrathoracic organs\r\nOverlapping lesion\ \ of retroperitoneum and peritoneum\r\nOverlapping lesion of skin\r\nOverlapping\ \ lesion of small intestine\r\nOverlapping lesion of stomach\r\nOverlapping lesion\ \ of tongue\r\nOverlapping lesion of tonsil\r\nOverlapping lesion of urinary organs\r\ \nOverlapping lesion of vulva\r\nOverlapping lesions of oropharynx\r\nPalate,\ \ NOS\r\nPancreas, NOS\r\nPancreatic duct\r\nParametrium\r\nParathyroid gland\r\ \nParaurethral gland\r\nParietal lobe\r\nParotid gland\r\nPelvic bones, sacrum,\ \ coccyx and associated joints\r\nPelvic lymph nodes\r\nPelvis, NOS\r\nPenis,\ \ NOS\r\nPeripheral nerves and autonomic nervous system of abdomen\r\nPeripheral\ \ nerves and autonomic nervous system of head, face, and neck\r\nPeripheral nerves\ \ and autonomic nervous system of lower limb and hip\r\nPeripheral nerves and\ \ autonomic nervous system of pelvis\r\nPeripheral nerves and autonomic nervous\ \ system of thorax\r\nPeripheral nerves and autonomic nervous system of trunk,\ \ NOS\r\nPeripheral nerves and autonomic nervous system of upper limb and shoulder\r\ \nPeritoneum, NOS\r\nPharynx, NOS\r\nPineal gland\r\nPituitary gland\r\nPlacenta\r\ \nPleura, NOS\r\nPostcricoid region\r\nPosterior mediastinum\r\nPosterior wall\ \ of bladder\r\nPosterior wall of hypopharynx\r\nPosterior wall of nasopharynx\r\ \nPosterior wall of oropharynx\r\nPrepuce\r\nProstate gland\r\nPylorus\r\nPyriform\ \ sinus\r\nRectosigmoid junction\r\nRectum, NOS\r\nRenal pelvis\r\nReticuloendothelial\ \ system, NOS\r\nRetina\r\nRetromolar area\r\nRetroperitoneum\r\nRib, sternum,\ \ clavicle and associated joints\r\nRound ligament\r\nScrotum, NOS\r\nShort bones\ \ of lower limb and associated joints\r\nShort bones of upper limb and associated\ \ joints\r\nSigmoid colon\r\nSkin of lip, NOS\r\nSkin of lower limb and hip\r\n\ Skin of other and unspecified parts of face\r\nSkin of scalp and neck\r\nSkin\ \ of trunk\r\nSkin of upper limb and shoulder\r\nSkin, NOS\r\nSmall intestine,\ \ NOS\r\nSoft palate, NOS\r\nSpecified parts of peritoneum\r\nSpermatic cord\r\ \nSphenoid sinus\r\nSpinal cord\r\nSpinal meninges\r\nSpleen\r\nSplenic flexure\ \ of colon\r\nStomach, NOS\r\nSubglottis\r\nSublingual gland\r\nSubmandibular\ \ gland\r\nSuperior wall of nasopharynx\r\nSupraglottis\r\nTail of pancreas\r\n\ Temporal lobe\r\nTestis, NOS\r\nThoracic esophagus\r\nThorax, NOS\r\nThymus\r\n\ Thyroid gland\r\nTongue, NOS\r\nTonsil, NOS\r\nTonsillar fossa\r\nTonsillar pillar\r\ \nTrachea\r\nTransverse colon\r\nTrigone of bladder\r\nUndescended testis\r\n\ Unknown primary site\r\nUpper Gum\r\nUpper limb, NOS\r\nUpper lobe, lung\r\nUpper\ \ respiratory tract, NOS\r\nUpper third of esophagus\r\nUpper-inner quadrant of\ \ breast\r\nUpper-outer quadrant of breast\r\nUrachus\r\nUreter\r\nUreteric orifice\r\ \nUrethra\r\nUrinary system, NOS\r\nUterine adnexa\r\nUterus, NOS\r\nUvula\r\n\ Vagina, NOS\r\nVallecula\r\nVentral surface of tongue, NOS\r\nVentricle, NOS\r\ \nVertebral column\r\nVestibule of mouth\r\nVulva, NOS\r\nWaldeyer ring\r\nBiliary\ \ tract, NOS\r\nCheek mucosa\r\nClitoris\r\nOverlapping lesion of biliary tract\r\ \nUnknown" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: tumor_grade constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '2785839' ea_cde_source: caDSR ea_description: Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness. entity: Diagnosis enumeration: "G1\r\nG2\r\nG3\r\nG4\r\nGX\r\nGB\r\nHigh Grade\r\nLow Grade\r\nUnknown" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: tumor_stage constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: C16899 ea_cde_source: NCIt ea_description: The extent of a cancer in the body. Staging is usually based on the size of the tumor, whether lymph nodes contain cancer, and whether the cancer has spread from the original site to other parts of the body. The accepted values for tumor_stage depend on the tumor site, type, and accepted staging system. These items should accompany the tumor_stage value as associated metadata. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: vital_status constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '5' ea_cde_source: caDSR ea_description: The survival state of the person registered on the protocol. entity: Diagnosis enumeration: "alive\r\ndead\r\nlost to follow-up\r\nunknown\r\nnot reported\r\n\ Not Allowed To Collect\r\nnot allowed to collect\r\npending" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ajcc_clinical_m constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3440331' ea_cde_source: caDSR ea_description: Extent of the distant metastasis for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment. entity: Diagnosis enumeration: "M0\r\nM1\r\nM1a\r\nM1b\r\nM1c\r\nMX\r\ncM0 (i+)\r\nUnknown\r\nNot\ \ Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ajcc_clinical_n constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3440330' ea_cde_source: caDSR ea_description: Extent of the regional lymph node involvement for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment. entity: Diagnosis enumeration: "N0\r\nN0 (i+)\r\nN0 (i-)\r\nN0 (mol+)\r\nN0 (mol-)\r\nN1\r\nN1a\r\n\ N1b\r\nN1bI\r\nN1bII\r\nN1bIII\r\nN1bIV\r\nN1c\r\nN1mi\r\nN2\r\nN2a\r\nN2b\r\n\ N2c\r\nN3\r\nN3a\r\nN3b\r\nN3c\r\nN4\r\nNX\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ajcc_clinical_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3440332' ea_cde_source: caDSR ea_description: Stage group determined from clinical information on the tumor (T), regional node (N) and metastases (M) and by grouping cases with similar prognosis for cancer. entity: Diagnosis enumeration: "Stage 0\r\nStage 0a\r\nStage 0is\r\nStage I\r\nStage IA\r\nStage IA1\r\ \nStage IA2\r\nStage IB\r\nStage IB1\r\nStage IB2\r\nStage IC\r\nStage II\r\n\ Stage IIA\r\nStage IIA1\r\nStage IIA2\r\nStage IIB\r\nStage IIC\r\nStage IIC1\r\ \nStage III\r\nStage IIIA\r\nStage IIIB\r\nStage IIIC\r\nStage IIIC1\r\nStage\ \ IIIC2\r\nStage IS\r\nStage IV\r\nStage IVA\r\nStage IVB\r\nStage IVC\r\nStage\ \ Tis\r\nStage X\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ajcc_clinical_t constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3440328' ea_cde_source: caDSR ea_description: Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment. entity: Diagnosis enumeration: "T0\r\nT1\r\nT1a\r\nT1a1\r\nT1a2\r\nT1b\r\nT1b1\r\nT1b2\r\nT1c\r\n\ T1mi\r\nT2\r\nT2a\r\nT2a1\r\nT2a2\r\nT2b\r\nT2c\r\nT2d\r\nT3\r\nT3a\r\nT3b\r\n\ T3c\r\nT3d\r\nT4\r\nT4a\r\nT4b\r\nT4c\r\nT4d\r\nT4e\r\nTX\r\nTa\r\nTis\r\nTis\ \ (DCIS)\r\nTis (LCIS)\r\nTis (Paget's)\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ajcc_pathologic_m constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3045439' ea_cde_source: caDSR ea_description: Code to represent the defined absence or presence of distant spread or metastases (M) to locations via vascular channels or lymphatics beyond the regional lymph nodes, using criteria established by the American Joint Committee on Cancer (AJCC). entity: Diagnosis enumeration: "M0\r\nM1\r\nM1a\r\nM1b\r\nM1c\r\nM2\r\nMX\r\ncM0 (i+)\r\nUnknown\r\ \nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ajcc_pathologic_n constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3203106' ea_cde_source: caDSR ea_description: The codes that represent the stage of cancer based on the nodes present (N stage) according to criteria based on multiple editions of the AJCC's Cancer Staging Manual. entity: Diagnosis enumeration: "N0\r\nN0 (i+)\r\nN0 (i-)\r\nN0 (mol+)\r\nN0 (mol-)\r\nN1\r\nN1a\r\n\ N1b\r\nN1bI\r\nN1bII\r\nN1bIII\r\nN1bIV\r\nN1c\r\nN1mi\r\nN2\r\nN2a\r\nN2b\r\n\ N2c\r\nN3\r\nN3a\r\nN3b\r\nN3c\r\nN4\r\nNX\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ajcc_pathologic_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3203222' ea_cde_source: caDSR ea_description: The extent of a cancer, especially whether the disease has spread from the original site to other parts of the body based on AJCC staging criteria. entity: Diagnosis enumeration: "Stage 0\r\nStage 0a\r\nStage 0is\r\nStage I\r\nStage IA\r\nStage IA1\r\ \nStage IA2\r\nStage IB\r\nStage IB1\r\nStage IB2\r\nStage IC\r\nStage II\r\n\ Stage IS\r\nStage IIA\r\nStage IIA1\r\nStage IIA2\r\nStage IIB\r\nStage IIC\r\n\ Stage III\r\nStage IIIA\r\nStage IIIB\r\nStage IIIC\r\nStage IIIC1\r\nStage IIIC2\r\ \nStage IV\r\nStage IVA\r\nStage IVB\r\nStage IVC\r\nStage Tis\r\nStage X\r\n\ Unknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ajcc_pathologic_t constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3045435' ea_cde_source: caDSR ea_description: Code of pathological T (primary tumor) to define the size or contiguous extension of the primary tumor (T), using staging criteria from the American Joint Committee on Cancer (AJCC). entity: Diagnosis enumeration: "T0\r\nT1\r\nT1a\r\nT1a1\r\nT1a2\r\nT1b\r\nT1b1\r\nT1b2\r\nT1c\r\n\ T1mi\r\nT2\r\nT2a\r\nT2a1\r\nT2a2\r\nT2b\r\nT2c\r\nT2d\r\nT3\r\nT3a\r\nT3b\r\n\ T3c\r\nT3d\r\nT4\r\nT4a\r\nT4b\r\nT4c\r\nT4d\r\nT4e\r\nTX\r\nTa\r\nTis\r\nTis\ \ (DCIS)\r\nTis (LCIS)\r\nTis (Paget's)\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ajcc_staging_system_edition constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '2722309' ea_cde_source: caDSR ea_description: The text term used to describe the version or edition of the American Joint Committee on Cancer Staging Handbooks, a publication by the group formed for the purpose of developing a system of staging for cancer that is acceptable to the American medical profession and is compatible with other accepted classifications. entity: Diagnosis enumeration: "1st\r\n2nd\r\n3rd\r\n4th\r\n5th\r\n6th\r\n7th\r\n8th\r\nUnknown\r\n\ Not Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: anaplasia_present constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6059599' ea_cde_source: caDSR ea_description: Yes/no/unknown/not reported indicator used to describe whether anaplasia was present at the time of diagnosis. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: anaplasia_present_type constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '4925534' ea_cde_source: caDSR ea_description: The text term used to describe the morphologic findings indicating the presence of a malignant cellular infiltrate characterized by the presence of large pleomorphic cells, necrosis, and high mitotic activity in a tissue sample. entity: Diagnosis enumeration: "Absent\r\nDiffuse\r\nEquivocal\r\nFocal\r\nPresent\r\nSclerosis\r\n\ Unknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ann_arbor_b_symptoms constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '2902402' ea_cde_source: caDSR ea_description: Text term to signify whether lymphoma B-symptoms are present as noted in the patient's medical record. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ann_arbor_clinical_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '5615604' ea_cde_source: caDSR ea_description: The text term used to describe the clinical classification of lymphoma, as defined by the Ann Arbor Lymphoma Staging System. entity: Diagnosis enumeration: "Stage I\r\nStage II\r\nStage III\r\nStage IV\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ann_arbor_extranodal_involvement constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3364582' ea_cde_source: caDSR ea_description: Indicator that identifies whether a patient with malignant lymphoma has lymphomatous involvement of an extranodal site. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ann_arbor_pathologic_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '5615605' ea_cde_source: caDSR ea_description: The text term used to describe the pathologic classification of lymphoma, as defined by the Ann Arbor Lymphoma Staging System. entity: Diagnosis enumeration: 'Stage I Stage II Stage III Stage IV Unknown Not Reported Not Reported' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: best_overall_response constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '2003324' ea_cde_source: caDSR ea_description: The best improvement achieved throughout the entire course of protocol treatment. entity: Diagnosis enumeration: "AJ-Adjuvant Therapy\r\nCPD-Clinical Progression\r\nCR-Complete Response\r\ \nCRU-Complete Response Unconfirmed\r\nDU-Disease Unchanged\r\nIMR-Immunoresponse\r\ \nIPD-Immunoprogression\r\nMR-Minimal/Marginal Response\r\nMX-Mixed Response\r\ \nNon-CR/Non-PD-Non-CR/Non-PD\r\nNPB-No Palliative Benefit\r\nNR-No Response\r\ \nPA-Palliative Therapy\r\nPB-Palliative Benefit\r\nPD-Progressive Disease\r\n\ PPD-Pseudoprogression\r\nPR-Partial Response\r\nPSR-Pseudoresponse\r\nRD-Responsive\ \ Disease\r\nRP-Response\r\nRPD-Radiographic Progressive Disease\r\nsCR-Stringent\ \ Complete Response\r\nSD-Stable Disease\r\nSPD-Surgical Progression\r\nTE-Too\ \ Early\r\nVGPR-Very Good Partial Response" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: burkitt_lymphoma_clinical_variant constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3770421' ea_cde_source: caDSR ea_description: Burkitt's lymphoma categorization based on clinical features that differ from other forms of the same disease. entity: Diagnosis enumeration: "Endemic\r\nImmunodeficiency-associated, adult\r\nImmunodeficiency-associated,\ \ pediatric\r\nSporadic, adult\r\nSporadic, pediatric\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: child_pugh_classification constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '2931791' ea_cde_source: caDSR ea_description: The text term used to describe the classification used in the prognosis of chronic liver disease, mainly cirrhosis. entity: Diagnosis enumeration: "A\r\nA5\r\nA6\r\nB\r\nB7\r\nB8\r\nB9\r\nC\r\nC10\r\nC11\r\nC12\r\n\ Unknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: circumferential_resection_margin constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6161030' ea_cde_source: caDSR ea_description: Numeric value used to describe the non-peritonealised bare area of rectum, comprising anterior and posterior segments, when submitted as a surgical specimen resulting from excision of cancer of the rectum. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Clinical column: classification_of_tumor constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3288124' ea_cde_source: caDSR ea_description: Text that describes the kind of disease present in the tumor specimen as related to a specific timepoint. entity: Diagnosis enumeration: "primary\r\nmetastasis\r\nrecurrence\r\nother\r\nUnknown\r\nnot reported\r\ \nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: cog_liver_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6013618' ea_cde_source: caDSR ea_description: The text term used to describe the staging classification of liver tumors, as defined by the Children's Oncology Group (COG). This staging system specifically describes the extent of the primary tumor prior to treatment. entity: Diagnosis enumeration: "Stage I\r\nStage II\r\nStage III\r\nStage IV\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: cog_neuroblastoma_risk_group constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '4616452' ea_cde_source: caDSR ea_description: Text term that represents the categorization of patients on the basis of prognostic factors per a system developed by Children's Oncology Group (COG). Risk level is used to assign treatment intensity. entity: Diagnosis enumeration: "High Risk\r\nIntermediate Risk\r\nLow Risk\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: cog_renal_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6013641' ea_cde_source: caDSR ea_description: The text term used to describe the staging classification of renal tumors, as defined by the Children's Oncology Group (COG). entity: Diagnosis enumeration: "Stage I\r\nStage II\r\nStage III\r\nStage IV\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: cog_rhabdomyosarcoma_risk_group constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6133604' ea_cde_source: caDSR ea_description: Text term used to describe the classification of rhabdomyosarcoma, as defined by the Children's Oncology Group (COG). entity: Diagnosis enumeration: "High Risk\r\nIntermediate Risk\r\nLow Risk\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: days_to_best_overall_response constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6154732' ea_cde_source: caDSR ea_description: Number of days between the date used for index and the date of the patient was thought to have the best overall response to their disease. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: days_to_diagnosis constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6154733' ea_cde_source: caDSR ea_description: Number of days between the date used for index and the date the patient was diagnosed with the malignant disease. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: enneking_msts_grade constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6003955' ea_cde_source: caDSR ea_description: The text term used to describe the surgical grade of the musculoskeletal sarcoma, using the Enneking staging system approved by the Musculoskeletal Tumor Society (MSTS). entity: Diagnosis enumeration: "High Grade (G2)\r\nLow Grade (G1)\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: enneking_msts_metastasis constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6003958' ea_cde_source: caDSR ea_description: Text term and code that represents the metastatic stage of the musculoskeletal sarcoma, using the Enneking staging system approved by the Musculoskeletal Tumor Society (MSTS). entity: Diagnosis enumeration: "No Metastasis (M0)\r\nRegional or Distant Metastasis (M1)\r\nUnknown\r\ \nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: enneking_msts_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6060045' ea_cde_source: caDSR ea_description: Text term used to describe the stage of the musculoskeletal sarcoma, using the Enneking staging system approved by the Musculoskeletal Tumor Society (MSTS). entity: Diagnosis enumeration: "Stage IA\r\nStage IB\r\nStage IIA\r\nStage IIB\r\nStage III\r\nUnknown\r\ \nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: enneking_msts_tumor_site constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6003957' ea_cde_source: caDSR ea_description: Text term and code that represents the tumor site of the musculoskeletal sarcoma, using the Enneking staging system approved by the Musculoskeletal Tumor Society (MSTS). entity: Diagnosis enumeration: "Extracompartmental (T2)\r\nIntracompartmental (T1)\r\nUnknown\r\n\ Not Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: esophageal_columnar_dysplasia_degree constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3440917' ea_cde_source: caDSR ea_description: Text term to describe the amount of dysplasia found within the benign esophageal columnar mucosa. entity: Diagnosis enumeration: "High Grade Dysplasia\r\nIndefinite for Dysplasia\r\nLow Grade Dysplasia\r\ \nNegative/ No Dysplasia\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: esophageal_columnar_metaplasia_present constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3440218' ea_cde_source: caDSR ea_description: The yes/no/unknown indicator used to describe whether esophageal columnar metaplasia was determined to be present. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: figo_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3225684' ea_cde_source: caDSR ea_description: The extent of a cervical or endometrial cancer within the body, especially whether the disease has spread from the original site to other parts of the body, as described by the International Federation of Gynecology and Obstetrics (FIGO) stages. entity: Diagnosis enumeration: "Stage 0\r\nStage I\r\nStage IA\r\nStage IA1\r\nStage IA2\r\nStage\ \ IB\r\nStage IB1\r\nStage IB2\r\nStage IC\r\nStage II\r\nStage IIA\r\nStage IIA1\r\ \nStage IIA2\r\nStage IIB\r\nStage IIC\r\nStage III\r\nStage IIIA\r\nStage IIIB\r\ \nStage IIIC\r\nStage IIIC1\r\nStage IIIC2\r\nStage IV\r\nStage IVA\r\nStage IVB\r\ \nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: first_symptom_prior_to_diagnosis constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6133605' ea_cde_source: caDSR ea_description: Text term used to describe the patient's first symptom experienced prior to diagnosis and thought to be related to the disease. entity: Diagnosis enumeration: "Altered Mental Status\r\nHeadaches\r\nMotor or Movement Changes\r\n\ Seizures\r\nSensory Changes\r\nVisual Changes\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: gastric_esophageal_junction_involvement constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6059632' ea_cde_source: caDSR ea_description: The yes/no/unknown/not reported indicator used to describe whether the tumor is located across the gastroesophageal junction. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: goblet_cells_columnar_mucosa_present constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3440219' ea_cde_source: caDSR ea_description: The yes/no/unknown indicator used to describe whether goblet cells were determined to be present in the esophageal columnar mucosa. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: gross_tumor_weight constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6133606' ea_cde_source: caDSR ea_description: Numeric value used to describe the gross pathologic tumor weight, measured in grams. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Clinical column: icd_10_code constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3226287' ea_cde_source: caDSR ea_description: Alphanumeric value used to describe the disease code from the tenth version of the International Classification of Disease (ICD-10). entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: inpc_grade constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6133602' ea_cde_source: caDSR ea_description: Text term used to describe the classification of neuroblastic differentiation within neuroblastoma tumors, as defined by the International Neuroblastoma Pathology Classification (INPC). entity: Diagnosis enumeration: "Differentiating\r\nPoorly Differentiated\r\nUndifferentiated\r\nUnknown\r\ \nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: inpc_histologic_group constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '4616372' ea_cde_source: caDSR ea_description: The text term used to describe the classification of neuroblastomas distinguishing between favorable and unfavorable histologic groups. The histologic score, defined by the International Neuroblastoma Pathology Classification (INPC), is based on age, mitosis-karyorrhexis index (MKI), stromal content and degree of tumor cell differentiation. entity: Diagnosis enumeration: "Favorable\r\nUnfavorable\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: inrg_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '5777238' ea_cde_source: caDSR ea_description: The text term used to describe the staging classification of neuroblastic tumors, as defined by the International Neuroblastoma Risk Group (INRG). entity: Diagnosis enumeration: "L1\r\nL2\r\nM\r\nMs\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: inss_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6133603' ea_cde_source: caDSR ea_description: Text term used to describe the staging classification of neuroblastic tumors, as defined by the International Neuroblastoma Staging System (INSS). entity: Diagnosis enumeration: "Stage 1\r\nStage 2A\r\nStage 2B\r\nStage 3\r\nStage 4\r\nStage 4S\r\ \nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: irs_group constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6141658' ea_cde_source: caDSR ea_description: Text term used to describe the classification of rhabdomyosarcoma tumors, as defined by the Intergroup Rhabdomyosarcoma Study (IRS). entity: Diagnosis enumeration: "Group I\r\nGroup Ia\r\nGroup Ib\r\nGroup II\r\nGroup IIa\r\nGroup\ \ IIb\r\nGroup IIc\r\nGroup III\r\nGroup IIIa\r\nGroup IIIb\r\nGroup IV\r\nUnknown\r\ \nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: irs_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '5162089' ea_cde_source: caDSR ea_description: The text term used to describe the classification of rhabdomyosarcoma tumors, as defined by the Intergroup Rhabdomyosarcoma Study (IRS). entity: Diagnosis enumeration: "1\r\n2\r\n3\r\n4\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: ishak_fibrosis_score constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3182621' ea_cde_source: caDSR ea_description: The text term used to describe the classification of the histopathologic degree of liver damage. entity: Diagnosis enumeration: "0 - No Fibrosis\r\n1,2 - Portal Fibrosis\r\n3,4 - Fibrous Septa\r\n\ 5 - Nodular Formation and Incomplete Cirrhosis\r\n6 - Established Cirrhosis\r\n\ Unknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: iss_stage constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '2465385' ea_cde_source: caDSR ea_description: The multiple myeloma disease stage at diagnosis. entity: Diagnosis enumeration: "I\r\nII\r\nIII\r\nNot Reported\r\nUnknown" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: laterality constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '827' ea_cde_source: caDSR ea_description: For tumors in paired organs, designates the side on which the cancer originates. entity: Diagnosis enumeration: "Bilateral\r\nLeft\r\nMidline\r\nRight\r\nUnilateral\r\nUnknown\r\n\ Not Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: lymph_nodes_positive constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '89' ea_cde_source: caDSR ea_description: The number of lymph nodes involved with disease as determined by pathologic examination. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: lymph_nodes_tested constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3' ea_cde_source: caDSR ea_description: The number of lymph nodes tested to determine whether lymph nodes were involved with disease as determined by a pathologic examination. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: lymphatic_invasion_present constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '64171' ea_cde_source: caDSR ea_description: A yes/no indicator to ask if small or thin-walled vessel invasion is present, indicating lymphatic involvement entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: medulloblastoma_molecular_classification constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6002209' ea_cde_source: caDSR ea_description: The text term used to describe the classification of medulloblastoma tumors based on molecular features. entity: Diagnosis enumeration: "Not Determined\r\nNon-WNT/non-SHH Activated\r\nSHH-Activated\r\nWNT-Activated\r\ \nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: metastasis_at_diagnosis constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6133614' ea_cde_source: caDSR ea_description: The text term used to describe the extent of metastatic disease present at diagnosis. entity: Diagnosis enumeration: "Distant Metastasis\r\nMetastasis, NOS\r\nNo Metastasis\r\nRegional\ \ Metastasis\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: metastasis_at_diagnosis_site constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3029815' ea_cde_source: caDSR ea_description: Text term to identify an anatomic site in which metastatic disease involvement is found. entity: Diagnosis enumeration: "Abdomen\r\nAdrenal Gland\r\nAscites\r\nBone\r\nBone Marrow\r\nBrain\r\ \nCerebrospinal Fluid\r\nCentral Nervous System\r\nColon\r\nDistant Nodes\r\n\ Distant Organ\r\nGroin\r\nLiver\r\nLung\r\nLymph Node, Axillary\r\nLymph Node,\ \ Inguinal\r\nLymph Node, NOS\r\nMediastinum\r\nOmentum\r\nOvary\r\nPelvis\r\n\ Peritoneal Cavity\r\nPeritoneum\r\nPleura\r\nScalp\r\nSkin\r\nSmall Intestine\r\ \nSoft Tissue\r\nSpinal Cord\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: method_of_diagnosis constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6161031' ea_cde_source: caDSR ea_description: Text term used to describe the method used to confirm the patients malignant diagnosis. entity: Diagnosis enumeration: "Autopsy\r\nBiopsy\r\nBlood Draw\r\nBone Marrow Aspirate\r\nCore Biopsy\r\ \nCytology\r\nCystoscopy\r\nDebulking\r\nDiagnostic Imaging\r\nDilation and Curettage\ \ Procedure\r\nEnucleation\r\nExcisional Biopsy\r\nFine Needle Aspiration\r\n\ Imaging\r\nIncisional Biopsy\r\nLaparoscopy\r\nLaparotomy\r\nOther\r\nPap Smear\r\ \nPhysical Exam\r\nPathologic Review\r\nSurgical Resection\r\nThoracentesis\r\n\ Ultrasound Guided Biopsy\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: micropapillary_features constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6068784' ea_cde_source: caDSR ea_description: The yes/no/unknown indicator used to describe whether micropapillary features were determined to be present. entity: Diagnosis enumeration: "Absent\r\nPresent\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: mitosis_karyorrhexis_index constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '4616412' ea_cde_source: caDSR ea_description: Text term that represents the component of the International Neuroblastoma Pathology Classification (INPC) for mitosis-karyorrhexis index (MKI). entity: Diagnosis enumeration: "High\r\nIntermediate\r\nLow\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: perineural_invasion_present constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '64181' ea_cde_source: caDSR ea_description: a yes/no indicator to ask if perineural invasion or infiltration of tumor or cancer is present. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: peripancreatic_lymph_nodes_positive constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '5983082' ea_cde_source: caDSR ea_description: Enumerated numeric value or range of values used to describe the number of peripancreatic lymph nodes determined to be positive. entity: Diagnosis enumeration: "0\r\n1-3\r\n4 or More\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: peripancreatic_lymph_nodes_tested constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6050944' ea_cde_source: caDSR ea_description: The total number of peripancreatic lymph nodes tested for the presence of pancreatic cancer cells. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Clinical column: prior_malignancy constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3382736' ea_cde_source: caDSR ea_description: The yes/no/unknown indicator used to describe the patient's history of prior cancer diagnosis. entity: Diagnosis enumeration: "yes\r\nno\r\nunknown\r\nnot reported\r\nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: prior_treatment constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '4231463' ea_cde_source: caDSR ea_description: A yes/no/unknown/not applicable indicator related to the administration of therapeutic agents received before the body specimen was collected. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported\r\nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: residual_disease constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '2608702' ea_cde_source: caDSR ea_description: Text terms to describe the status of a tissue margin following surgical resection. entity: Diagnosis enumeration: "R0\r\nR1\r\nR2\r\nRX\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: supratentorial_localization constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3133891' ea_cde_source: caDSR ea_description: Text term to specify the location of the supratentorial tumor. entity: Diagnosis enumeration: "Cerebral Cortex\r\nDeep Gray (e.g. Basal Ganglia, Thalamus)\r\nSpinal\ \ Cord\r\nWhite Matter\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: synchronous_malignancy constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6142390' ea_cde_source: caDSR ea_description: A yes/no/unknown indicator used to describe whether the patient had an additional malignant diagnosis at the same time the tumor used for sequencing was diagnosed. If both tumors were sequenced, both tumors would have synchronous malignancies. entity: Diagnosis enumeration: 'Yes No Unknown Not Reported Not Allowed To Collect' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: tumor_confined_to_organ_of_origin constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '4925494' ea_cde_source: caDSR ea_description: The yes/no/unknown indicator used to describe whether the tumor is confined to the organ where it originated and did not spread to a proximal or distant location within the body. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported\r\nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: tumor_focality constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3174022' ea_cde_source: caDSR ea_description: The text term used to describe whether the patient's disease originated in a single location or multiple locations. entity: Diagnosis enumeration: "Multifocal\r\nUnifocal\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: tumor_largest_dimension_diameter constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '64215' ea_cde_source: caDSR ea_description: Numeric value used to describe the maximum diameter or dimension of the primary tumor, measured in centimeters. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Clinical column: tumor_regression_grade constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '6471217' ea_cde_source: caDSR ea_description: A numeric value used to measure therapeutic response of the primary tumor and predict patient outcomes based on a three-point tumor regression grading system. entity: Diagnosis enumeration: "0\r\n1\r\n2\r\n3\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: vascular_invasion_present constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '64358' ea_cde_source: caDSR ea_description: The yes/no indicator to ask if large vessel or venous invasion was detected by surgery or presence in a tumor specimen. entity: Diagnosis enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported\r\nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: vascular_invasion_type constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '3168001' ea_cde_source: caDSR ea_description: Text term that represents the type of vascular tumor invasion. entity: Diagnosis enumeration: "Extramural\r\nIntramural\r\nMacro\r\nMicro\r\nNo Vascular Invasion\r\ \nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: wilms_tumor_histologic_subtype constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '4358735' ea_cde_source: caDSR ea_description: The text term used to describe the classification of Wilms tumors distinguishing between favorable and unfavorable histologic groups. entity: Diagnosis enumeration: "Favorable\r\nUnfavorable\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Clinical column: year_of_diagnosis constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '2896960' ea_cde_source: caDSR ea_description: Numeric value to represent the year of an individual's initial pathologic diagnosis of cancer. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Clinical column: hiv_positive constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Text term to signify whether a physician has diagnosed HIV infection in a patient. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: hpv_positive_type constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Text classification to represent the strain or type of human papillomavirus identified in an individual. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: hpv_status constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: The findings of the oncogenic HPV. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: ldh_level_at_diagnosis constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '2798766' ea_cde_source: caDSR ea_description: The 2 decimal place numeric laboratory value measured, assigned or computed related to the assessment of lactate dehydrogenase in a specimen. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: ldh_normal_range_upper constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '89' ea_cde_source: caDSR ea_description: The top value of the range of statistical characteristics that are supposed to represent accepted standard, non-pathological pattern for lactate dehydrogenase (units not specified). entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: new_event_anatomic_site constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Text term to specify the anatomic location of the return of tumor after treatment. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: new_event_type constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Text term to identify a new tumor event. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: overall_survival constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Number of days between the date used for index and the patient's date of death or the date the patient was last known to be alive. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: progression_free_survival constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Number of days between the date used for index and the first date the patient is known to be free of disease progression. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: progression_free_survival_event constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: The event used to define the patient''s disease progression. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: cause_of_death constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Text term to identify the cause of death for a patient. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: days_to_birth constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Time interval from a person's date of birth to the date of initial pathologic diagnosis, represented as a calculated negative number of days. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: days_to_death constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Time interval from a person's date of death to the date of initial pathologic diagnosis, represented as a calculated number of days. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: colon_polyps_history constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Yes/No indicator to describe if the subject had a previous history of colon polyps as noted in the history/physical or previous endoscopic report (s). entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: days_to_hiv_diagnosis constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Time interval from the date of the initial pathologic diagnosis to the date of human immunodeficiency diagnosis, represented as a calculated number of days. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Clinical column: days_to_new_event constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Data from the investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation. ea_cde_id: '' ea_cde_source: '' ea_description: Time interval from the date of new tumor event including progression, recurrence and new primary malignancies to the date of initial pathologic diagnosis, represented as a calculated number of days. entity: Diagnosis enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Data File column: file_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: Data files submitted by a user or generated by data analysis pipeline. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: File enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Data File column: file_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Data files submitted by a user or generated by data analysis pipeline. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: File enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Data File column: file_type constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data files submitted by a user or generated by data analysis pipeline. ea_cde_id: '' ea_cde_source: '' ea_description: 'Specific kind of file to denote raw or processed ' entity: File enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Data File column: md5sum constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data files submitted by a user or generated by data analysis pipeline. ea_cde_id: '' ea_cde_source: '' ea_description: A value derived from a file for the purpose of detecting errors which may have been introduced during its transmission or storage. entity: File enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Data File column: file_size constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data files submitted by a user or generated by data analysis pipeline. ea_cde_id: '' ea_cde_source: '' ea_description: Size of the file in megabytes entity: File enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Data File column: file_location constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data files submitted by a user or generated by data analysis pipeline. ea_cde_id: '' ea_cde_source: '' ea_description: Physical location of the file on the server entity: File enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Data File column: file_name constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data files submitted by a user or generated by data analysis pipeline. ea_cde_id: '' ea_cde_source: '' ea_description: Assigned file name entity: File enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Data File column: access constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Data files submitted by a user or generated by data analysis pipeline. ea_cde_id: '' ea_cde_source: '' ea_description: The Open Access data tier comprises public data not unique to an individual. The Open Access data tier does not require authorization. The Controlled Access data tier contains data that may be unique to an individual. All data types are stripped of direct identifiers. The Controlled Access data tier requires authorization. entity: File enumeration: 'open controlled' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biological column: gene_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Gene enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biological column: gene_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Gene enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biological column: gene_name constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: NCBI Gene name entity: Gene enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biological column: ncbi_gene_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: NCBI Gene identifier entity: Gene enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Biological column: authority constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: HGNC Identifier entity: Gene enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biological column: description constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: NCBI Gene description entity: Gene enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biological column: organism constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: NCBI Gene organism entity: Gene enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biological column: chromosome constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: NCBI Gene chromosome entity: Gene enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biological column: locus constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: NCBI Gene cytoband entity: Gene enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biological column: proteins constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: Semi-colon separated list of protein accessions associated with the gene entity: Gene enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biological column: assays constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A functional unit of heredity which occupies a specific position on a particular chromosome and serves as the template for a product that contributes to a phenotype or a biological function. ea_cde_id: '' ea_cde_source: '' ea_description: CPTAC Assay accessions for the peptides associated with the gene entity: Gene enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: portion_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: A physical sub-part of any sample. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Portion enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biospecimen column: portion_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: A physical sub-part of any sample. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Portion enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biospecimen column: portion_submitter_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: A physical sub-part of any sample. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Portion enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: sample_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: A physical sub-part of any sample. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Portion enumeration: '' example_value: '' key: Y reference_type: Portion references the Sample it is derived from. referenced_entity: Sample type_general: '' - category: Biospecimen column: sample_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: A physical sub-part of any sample. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Portion enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: creation_datetime constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A physical sub-part of any sample. ea_cde_id: '5432592' ea_cde_source: caDSR ea_description: The datetime of portion creation encoded as seconds from epoch. entity: Portion enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: is_ffpe constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A physical sub-part of any sample. ea_cde_id: '4170557' ea_cde_source: caDSR ea_description: Indicator to signify whether or not the tissue sample was fixed in formalin and embedded in paraffin (FFPE). entity: Portion enumeration: "true\r\nfalse" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: portion_number constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A physical sub-part of any sample. ea_cde_id: '5432711' ea_cde_source: caDSR ea_description: Numeric value that represents the sequential number assigned to a portion of the sample. entity: Portion enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: weight constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: A physical sub-part of any sample. ea_cde_id: '651' ea_cde_source: caDSR ea_description: Numeric value that represents the sample portion weight, measured in milligrams. entity: Portion enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Administrative column: program_id constraint_type: PRIMARY KEY e_cde_id: C52647 e_cde_source: NCIt e_description: A broad framework of goals to be achieved. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Program enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Administrative column: program_id constraint_type: UNIQUE e_cde_id: C52647 e_cde_source: NCIt e_description: A broad framework of goals to be achieved. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Program enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Administrative column: program_submitter_id constraint_type: UNIQUE e_cde_id: C52647 e_cde_source: NCIt e_description: A broad framework of goals to be achieved. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Program enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: program_shortname constraint_type: NOT NULL e_cde_id: C52647 e_cde_source: NCIt e_description: A broad framework of goals to be achieved. ea_cde_id: '' ea_cde_source: '' ea_description: Short name for the program entity: Program enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: name constraint_type: NOT NULL e_cde_id: C52647 e_cde_source: NCIt e_description: A broad framework of goals to be achieved. ea_cde_id: '' ea_cde_source: '' ea_description: 'Name of the program ' entity: Program enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: sponsor constraint_type: '' e_cde_id: C52647 e_cde_source: NCIt e_description: A broad framework of goals to be achieved. ea_cde_id: '' ea_cde_source: '' ea_description: Funding agency entity: Program enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: start_date constraint_type: NOT NULL e_cde_id: C52647 e_cde_source: NCIt e_description: A broad framework of goals to be achieved. ea_cde_id: '' ea_cde_source: '' ea_description: Start date of the program entity: Program enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: end_date constraint_type: '' e_cde_id: C52647 e_cde_source: NCIt e_description: A broad framework of goals to be achieved. ea_cde_id: '' ea_cde_source: '' ea_description: End date of the program entity: Program enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: program_manager constraint_type: NOT NULL e_cde_id: C52647 e_cde_source: NCIt e_description: A broad framework of goals to be achieved. ea_cde_id: '' ea_cde_source: '' ea_description: Name of the program manager from the sponsoring agency entity: Program enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: project_id constraint_type: PRIMARY KEY e_cde_id: C47885 e_cde_source: NCIt e_description: Any specifically defined piece of work that is undertaken or attempted to meet a single requirement. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Project enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Administrative column: project_id constraint_type: UNIQUE e_cde_id: C47885 e_cde_source: NCIt e_description: Any specifically defined piece of work that is undertaken or attempted to meet a single requirement. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Project enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Administrative column: project_submitter_id constraint_type: UNIQUE e_cde_id: C47885 e_cde_source: NCIt e_description: Any specifically defined piece of work that is undertaken or attempted to meet a single requirement. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Project enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: program_id constraint_type: FOREIGN KEY e_cde_id: C47885 e_cde_source: NCIt e_description: Any specifically defined piece of work that is undertaken or attempted to meet a single requirement. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Project enumeration: '' example_value: '' key: Y reference_type: Project references the Program it is part of. referenced_entity: Program type_general: '' - category: Administrative column: program_submitter_id constraint_type: NOT NULL e_cde_id: C47885 e_cde_source: NCIt e_description: Any specifically defined piece of work that is undertaken or attempted to meet a single requirement. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Project enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: name constraint_type: '' e_cde_id: C47885 e_cde_source: NCIt e_description: Any specifically defined piece of work that is undertaken or attempted to meet a single requirement. ea_cde_id: '' ea_cde_source: '' ea_description: Display name for the project entity: Project enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: protocol_id constraint_type: PRIMARY KEY e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protocol enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Metadata column: protocol_id constraint_type: UNIQUE e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protocol enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Metadata column: protocol_submitter_id constraint_type: UNIQUE e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protocol enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: program_id constraint_type: FOREIGN KEY e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protocol enumeration: '' example_value: '' key: Y reference_type: Protocol references the Program it is part of. referenced_entity: Program type_general: '' - category: Metadata column: program_submitter_id constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protocol enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: protocol_name constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: External analytical sample protocol name entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: protocol_date constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Date protocol was created or updated entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: date - category: Metadata column: document_name constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Name of protocol document entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: quantitation_strategy constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: MS:1001833 ea_cde_source: PSI MS ea_description: General strategy used for differential analysis entity: Protocol enumeration: 'Absolute quantitation analysis Isobaric label quantitation analysis LC-MS label-free quantitation analysis Metabolic labeling 14N / 15N quantitation analysis MS1 label-based analysis MS2 tag-based analysis SILAC quantitation analysis Spectral counting analysis SRM quantitation analysis' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: experiment_type constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Type of labeling reagent used. Indicate number of channels. entity: Protocol enumeration: 'Label Free iTRAQ4 TMT10 TMT11' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: label_free_quantiataion constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: MS:1001834 ea_cde_source: PSI MS ea_description: Type of label free data analysis strategy proposed for this data entity: Protocol enumeration: 'Label-free protein level quantitation Label-free peptide level quantitation Label-free proteingroup level quantitation Label-free raw feature quantitation Label-free gene level quantitation' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: labeled_quantitation constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: MS:1002009 ea_cde_source: PSI MS ea_description: Type of labeling used entity: Protocol enumeration: 'AminoxyTMT DiART DiLeu Glyco-TMT Hydrazide TMT IodoTMT IPTL iTRAQ iTRAQH TMT' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: isobaric_labeling_reagent constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Reagent set used for isobaric labeling entity: Protocol enumeration: 'iTRAQ TMT 180 AQUA ICAT ICPL SILAC N/A' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: reporter_ion_ms_level constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: MS level at which fragmentation spectra should be analyzed for reporter ions entity: Protocol enumeration: 'MS2 MS3 N/A ' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: starting_amount constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Mass with units entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Metadata column: starting_amount_uom constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Unit of Measure of starting_amount entity: Protocol enumeration: "\xC2\xB5g\nmg" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: digestion_reagent constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: MS:1001045 ea_cde_source: PSI MS ea_description: Enzyme or reagent used for digestion. Multiple enzymes can be separated by (;) entity: Protocol enumeration: '2-iodobenzoate Arg-C, Asp-N Asp-N_ambic Chymotrypsin CNBr, Formic_acid Glutamyl endopeptidase Leukocyte elastase Lys-C, Lys-C/P No cleavage NoEnzyme PepsinA Proline endopeptidase TrypChymo Trypsin Trypsin/P Unspecific cleavage V8-DE V8-E' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: alkylation_reagent constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Reagent used for cysteine alkylation entity: Protocol enumeration: 'Iodoacetamide (IAA) 2-chloroacetamide (TCEP) tris(2-carboxyethyl)phosphine' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: enrichment_strategy constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Type of peptide or protein enrichment entity: Protocol enumeration: "Proteome\r\nPhosphoproteome\nGlycoproteome" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: enrichment constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Protocol or reagent used for enrichment entity: Protocol enumeration: 'Hydrazide Beads (Glycopeptides) Fe3+ NTA-Agarose (Qiagen) Phosphopeptide enrichment with immobilized metal affinity chromatography (NiNTA beads stripped with EDTA and loaded with FeCl3; Qiagen) N/A' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: chromatography_dimensions_count constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Number of discrete chromatographic dimensions used entity: Protocol enumeration: '1 2 3' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: 1d_chromatography_type constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Type of chromatography of the first dimension. If only 1D was used, annotate that dimension here. entity: Protocol enumeration: 'RPLC bRPLC bRPLC (pH 7.5) bRPLC (pH 10) SCX' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: 2d_chromatography_type constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Type of chromatography for the second dimension. This will generally be RPLC. entity: Protocol enumeration: RPLC example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: fractions_analyzed_count constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Final number of fractions analyzed by mass spectrometry. For Thermo instruments, this will equal the number of data files. entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Metadata column: column_type constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Type of column used entity: Protocol enumeration: 'C18 New Objective PicoFrit SELF/P' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: amount_on_column constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Approximate mass with units entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Metadata column: amount_on_column_uom constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: "Unit of Measure of amount_on_column, \xC2\xB5g" entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: column_length constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Approximate length with units entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Metadata column: column_length_uom constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Unit of Measure of column_length, cm entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: column_inner_diameter constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Approximate diameter with units entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Metadata column: column_inner_diameter_uom constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: "Unit of Measure of column_inner_diameter, \xC2\xB5m" entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: particle_size constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Approximate size with units entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Metadata column: particle_size_uom constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: "Unit of Measure of particle_size, \xC2\xB5m" entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: particle_type constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Manufacturer or brand name of particle if applicable entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: gradient_length constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Time with units entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Metadata column: gradient_length_uom constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Unit of Measure of gradient_length, minutes entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: instrument_make constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: 'Manufacturer of instrument ' entity: Protocol enumeration: 'Agilent Applied Biosystems Bruker Dionex Hitachi LECO SCIEX Shimadzu Thermo Fisher Scientific Varian Waters' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: instrument_model constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: depends on make ea_cde_source: '' ea_description: 'Model of instrument ' entity: Protocol enumeration: '1200 series LC/MSD SL 1200 series LC/MSD VL 6110 Quadrupole LC/MS 6120A Quadrupole LC/MS 6120B Quadrupole LC/MS 6130 Quadrupole LC/MS 6140 Quadrupole LC/MS 6150 Quadrupole LC/MS 6210 Time-of-Flight LC/MS 6220 Time-of-Flight LC/MS 6224 Time-of-Flight LC/MS 6230A Time-of-Flight LC/MS 6230B Time-of-Flight LC/MS 6310 Ion Trap LC/MS 6320 Ion Trap LC/MS 6330 Ion Trap LC/MS 6340 Ion Trap LC/MS 6410 Triple Quadrupole LC/MS 6420 Triple Quadrupole LC/MS 6430 Triple Quadrupole LC/MS 6460 Triple Quadrupole LC/MS 6490 Triple Quadrupole LC/MS 6495A Triple Quadrupole LC/MS 6495B Triple Quadrupole LC/MS 6510 Quadrupole Time-of-Flight LC/MS 6520A Quadrupole Time-of-Flight LC/MS 6520B Q-TOF LC/MS 6530A Q-TOF LC/MS 6530B Q-TOF LC/MS 6538 Q-TOF LC/MS 6540 Q-TOF LC/MS 6542 Q-TOF LC/MS 6545 Q-TOF LC/MS 6550 iFunnel Q-TOF LC/MS 6550A iFunnel Q-TOF LC/MS 6560 Q-TOF LC/MS 6570 Q-TOF LC/MS 7000A Triple Quadrupole GC/MS 7000B Triple Quadrupole GC/MS 7800 Quadrupole ICP-MS 8800 Triple Quadrupole ICP-MS 4700 Proteomics Analyzer 4800 Proteomics Analyzer Voyager-DE PRO Voyager-DE STR Bruker Daltonics amaZon series Bruker Daltonics apex series Bruker Daltonics BioTOF series Bruker Daltonics esquire series Bruker Daltonics EVOQ series Bruker Daltonics flex series Bruker Daltonics HCT Series Bruker Daltonics maXis series Bruker Daltonics micrOTOF series Bruker Daltonics SCION series Bruker Daltonics solarix series timsTOF Pro Citius HRT Pegasus Pegasus 4D Pegasus BT Pegasus HRT Pegasus III TruTOF 2000 QTRAP 2500 QTRAP 3200 QTRAP 3500 QTRAP 4000 QTRAP 4000 QTRAP 4800 Plus MALDI TOF/TOF 5800 TOF/TOF API 100 API 100LC API 150EX API 150EX Prep API 165 API 2000 API 300 API 3000 API 3200 API 350 API 365 API 4000 API 5000 proteomics solution 1 Q TRAP QSTAR QSTAR Elite QSTAR Pulsar QSTAR XL QTRAP 4500 QTRAP 5500 QTRAP 6500 QTRAP 6500+ SymBiot I SymBiot XVI Triple Quad 3500 Triple Quad 4500 Triple Quad 5500 Triple Quad 6500 Triple Quad 6500+ TripleTOF 4600 TripleTOF 5600 TripleTOF 5600+ TripleTOF 6600 X500R QTOF AXIMA Assurance Linear MALDI-TOF AXIMA CFR MALDI-TOF AXIMA Confidence MALDI-TOF AXIMA Performance MALDI-TOF/TOF AXIMA-CFR plus AXIMA-QIT Shimadzu MALDI-7090 LCMS-2010A LCMS-2010EV LCMS-2020 LCMS-8040 LCMS-8045 LCMS-8050 LCMS-8060 LCMS-9030 LCMS-IT-TOF" "Accela PDA DFS DSQ II Element 2 Element GD Element XR Exactive Exactive Plus GC IsoLink ISQ ITQ 1100 ITQ 700 ITQ 900 LTQ LTQ FT LTQ FT Ultra LTQ Orbitrap LTQ Orbitrap Classic LTQ Orbitrap Discovery LTQ Orbitrap Elite LTQ Orbitrap Velos LTQ Orbitrap XL LTQ Orbitrap XL ETD LTQ Velos LTQ Velos ETD LTQ XL LTQ XL ETD LXQ MALDI LTQ Orbitrap MALDI LTQ XL Orbitrap Fusion Orbitrap Fusion ETD Orbitrap Fusion Lumos Q Exactive Q Exactive HF Q Exactive HF-X Q Exactive Plus Surveyor PDA TSQ 8000 Evo TSQ 9000 TSQ Altis TSQ Endura TSQ Quantis TSQ Quantiva TSQ Quantum Access TSQ Quantum Ultra TSQ Quantum Ultra AM TSQ Vantage Velos Plus" "explorer HiRes ESI HiRes MALDI OMEGA OMEGA-2001 ultima" "3100 Acquity TQD ACQUITY UPLC Acquity UPLC FLR ACQUITY UPLC H-Class ACQUITY UPLC H-Class Bio ACQUITY UPLC I-Class Acquity UPLC PDA ACQUITY UPLC Systems with 2D Technology Auto Spec Ultima NT GCT GCT Premier IsoPrime IsoProbe T M@LDI L M@LDI LR MALDI Synapt G2-S HDMS MALDI Synapt G2-S MS MALDI SYNAPT G2-Si MALDI Synapt HDMS MALDI Synapt MS nanoACQUITY UPLC nanoACQUITY UPLC System with 1D Technology nanoACQUITY UPLC with HDX Technology NG-5400 Platform ICP Q-Tof micro Q-Tof Premier Q-Tof Ultima quattro micro Quattro micro GC Quattro Ultima SQ Detector 2 Synapt G2 HDMS Synapt G2 MS Synapt G2-S HDMS Synapt G2-S MS SYNAPT G2-Si Synapt HDMS Synapt MS TRIZAIC UPLC nanoTile Xevo G2 Q-Tof Xevo G2 Tof Xevo G2 XS Tof Xevo G2-S QTof Xevo G2-S Tof Xevo Q-Tof Xevo TQ MS Xevo TQ-S Xevo TQD' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: dissociation_type constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: MS:1000044 ea_cde_source: PSI MS ea_description: Gas phase dissociation type entity: Protocol enumeration: 'HCD CID ETD ECD' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: ms1_resolution constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: MS:1000011 ea_cde_source: PSI MS ea_description: MS1 resolution, typically at 400 m/z entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Metadata column: ms2_resolution constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: MS:1000011 ea_cde_source: PSI MS ea_description: MS2 resolution, typically at 400 m/z entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Metadata column: dda_topn constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Number of precursors sampled per cycle entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: normalized_collision_energy constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: MS:1000138 ea_cde_source: PSI MS ea_description: Normalized collisions energy (%) entity: Protocol enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: acquistion_type constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Mass spectrometry acquisition method entity: Protocol enumeration: 'DDA DIA SRM PRM' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: dia_multiplexing constraint_type: NOT NULL e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: MS:1000501, MS:1000500 ea_cde_source: PSI MS ea_description: Uses overlapping windows (MSX) entity: Protocol enumeration: 'Yes No N/A' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Metadata column: dia_ims constraint_type: '' e_cde_id: C70817 e_cde_source: NCIt e_description: The formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. ea_cde_id: '' ea_cde_source: '' ea_description: Uses ion mobility separation entity: Protocol enumeration: 'Yes No N/A' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: sample_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Sample enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biospecimen column: sample_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Sample enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Biospecimen column: sample_submitter_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Sample enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: case_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Sample enumeration: '' example_value: '' key: Y reference_type: Sample references the Case it is derived from. referenced_entity: Case type_general: '' - category: Biospecimen column: case_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Sample enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: gdc_sample_id constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: Sample identifier associated with the sample at the genomic data commons entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: gdc_project_id constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: Project identifier associated with the sample at the genomic data commons entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: sample_type constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '3111302' ea_cde_source: caDSR ea_description: Text term to describe the source of a biospecimen used for a laboratory test. entity: Sample enumeration: 'Additional Metastatic Additional - New Primary Blood Derived Cancer - Bone Marrow, Post-treatment Blood Derived Cancer - Peripheral Blood, Post-treatment Blood Derived Normal Bone Marrow Normal Buccal Cell Normal Cell Line Derived Xenograft Tissue Cell Lines Control Analyte DNA EBV Immortalized Normal FFPE Recurrent FFPE Scrolls Fibroblasts from Bone Marrow Normal GenomePlex (Rubicon) Amplified DNA Granulocytes Human Tumor Original Cells Lymphoid Normal Metastatic Mononuclear Cells from Bone Marrow Normal Next Generation Cancer Model Primary Blood Derived Cancer - Peripheral Blood Recurrent Blood Derived Cancer - Peripheral Blood Pleural Effusion Primary Blood Derived Cancer - Bone Marrow Primary Tumor Primary Xenograft Tissue Post neo-adjuvant therapy Recurrent Blood Derived Cancer - Bone Marrow Recurrent Tumor Repli-G (Qiagen) DNA Repli-G X (Qiagen) DNA RNA Slides Solid Tissue Normal Total RNA Tumor Adjacent Normal - Post Neo-adjuvant Therapy Tumor Xenograft Tissue Unknown Not Reported Not Allowed To Collect' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: tissue_type constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432687' ea_cde_source: caDSR ea_description: Text term that represents a description of the kind of tissue collected with respect to disease status or proximity to tumor tissue. entity: Sample enumeration: "Tumor\r\nNormal\r\nAbnormal\r\nPeritumoral\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: biospecimen_anatomic_site constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '4742851' ea_cde_source: caDSR ea_description: Text term that represents the name of the primary disease site of the submitted tumor sample. entity: Sample enumeration: "Abdomen\r\nAbdominal Wall\r\nAcetabulum\r\nAdenoid\r\nAdipose\r\n\ Adrenal\r\nAlveolar Ridge\r\nAmniotic Fluid\r\nAmpulla Of Vater\r\nAnal Sphincter\r\ \nAnkle\r\nAnorectum\r\nAntecubital Fossa\r\nAntrum\r\nAnus\r\nAorta\r\nAortic\ \ Body\r\nAppendix\r\nAqueous Fluid\r\nArm\r\nArtery\r\nAscending Colon\r\nAscending\ \ Colon Hepatic Flexure\r\nAuditory Canal\r\nAutonomic Nervous System\r\nAxilla\r\ \nBack\r\nBile Duct\r\nBladder\r\nBlood\r\nBlood Vessel\r\nBone\r\nBone Marrow\r\ \nBowel\r\nBrain\r\nBrain Stem\r\nBreast\r\nBroad Ligament\r\nBronchiole\r\nBronchus\r\ \nBrow\r\nBuccal Cavity\r\nBuccal Mucosa\r\nButtock\r\nCalf\r\nCapillary\r\nCardia\r\ \nCarina\r\nCarotid Artery\r\nCarotid Body\r\nCartilage\r\nCecum\r\nCell-Line\r\ \nCentral Nervous System\r\nCerebellum\r\nCerebral Cortex\r\nCerebrospinal Fluid\r\ \nCerebrum\r\nCervical Spine\r\nCervix\r\nChest\r\nChest Wall\r\nChin\r\nClavicle\r\ \nClitoris\r\nColon\r\nColon - Mucosa Only\r\nCommon Duct\r\nConjunctiva\r\nConnective\ \ Tissue\r\nDermal\r\nDescending Colon\r\nDiaphragm\r\nDuodenum\r\nEar\r\nEar\ \ Canal\r\nEar, Pinna (External)\r\nEffusion\r\nElbow\r\nEndocrine Gland\r\nEpididymis\r\ \nEpidural Space\r\nEsophageal; Distal\r\nEsophageal; Mid\r\nEsophageal; Proximal\r\ \nEsophagogastric Junction\r\nEsophagus\r\nEsophagus - Mucosa Only\r\nEye\r\n\ Fallopian Tube\r\nFemoral Artery\r\nFemoral Vein\r\nFemur\r\nFibroblasts\r\nFibula\r\ \nFinger\r\nFloor Of Mouth\r\nFluid\r\nFoot\r\nForearm\r\nForehead\r\nForeskin\r\ \nFrontal Cortex\r\nFrontal Lobe\r\nFundus Of Stomach\r\nGallbladder\r\nGanglia\r\ \nGastroesophageal Junction\r\nGastrointestinal Tract\r\nGroin\r\nGum\r\nHand\r\ \nHard Palate\r\nHead & Neck\r\nHead - Face Or Neck, Nos\r\nHeart\r\nHepatic\r\ \nHepatic Duct\r\nHepatic Flexure\r\nHepatic Vein\r\nHip\r\nHippocampus\r\nHumerus\r\ \nHypopharynx\r\nIleum\r\nIlium\r\nIndex Finger\r\nIschium\r\nIslet Cells\r\n\ Jaw\r\nJejunum\r\nJoint\r\nKidney\r\nKnee\r\nLacrimal Gland\r\nLarge Bowel\r\n\ Laryngopharynx\r\nLarynx\r\nLeg\r\nLeptomeninges\r\nLigament\r\nLip\r\nLiver\r\ \nLumbar Spine\r\nLung\r\nLymph Node\r\nLymph Node(s) Axilla\r\nLymph Node(s)\ \ Cervical\r\nLymph Node(s) Distant\r\nLymph Node(s) Epitrochlear\r\nLymph Node(s)\ \ Femoral\r\nLymph Node(s) Hilar\r\nLymph Node(s) Iliac-Common\r\nLymph Node(s)\ \ Iliac-External\r\nLymph Node(s) Inguinal\r\nLymph Node(s) Internal Mammary\r\ \nLymph Node(s) Mammary\r\nLymph Node(s) Mesenteric\r\nLymph Node(s) Occipital\r\ \nLymph Node(s) Paraaortic\r\nLymph Node(s) Parotid\r\nLymph Node(s) Pelvic\r\n\ Lymph Node(s) Popliteal\r\nLymph Node(s) Regional\r\nLymph Node(s) Retroperitoneal\r\ \nLymph Node(s) Scalene\r\nLymph Node(s) Splenic\r\nLymph Node(s) Subclavicular\r\ \nLymph Node(s) Submandibular\r\nLymph Node(s) Supraclavicular\r\nLymph Nodes(s)\ \ Mediastinal\r\nMandible\r\nMaxilla\r\nMediastinal Soft Tissue\r\nMediastinum\r\ \nMesentery\r\nMesothelium\r\nMiddle Finger\r\nMitochondria\r\nMuscle\r\nNails\r\ \nNasal Cavity\r\nNasal Soft Tissue\r\nNasopharynx\r\nNeck\r\nNerve\r\nNerve(s)\ \ Cranial\r\nOccipital Cortex\r\nOcular Orbits\r\nOmentum\r\nOral Cavity\r\nOral\ \ Cavity - Mucosa Only\r\nOropharynx\r\nOther\r\nOvary\r\nPalate\r\nPancreas\r\ \nParaspinal Ganglion\r\nParathyroid\r\nParotid Gland\r\nPatella\r\nPelvis\r\n\ Penis\r\nPericardium\r\nPeriorbital Soft Tissue\r\nPeritoneal Cavity\r\nPeritoneum\r\ \nPharynx\r\nPineal\r\nPineal Gland\r\nPituitary Gland\r\nPlacenta\r\nPleura\r\ \nPopliteal Fossa\r\nProstate\r\nPylorus\r\nRectosigmoid Junction\r\nRectum\r\n\ Retina\r\nRetro-Orbital Region\r\nRetroperitoneum\r\nRib\r\nRing Finger\r\nRound\ \ Ligament\r\nSacrum\r\nSalivary Gland\r\nScalp\r\nScapula\r\nSciatic Nerve\r\n\ Scrotum\r\nSeminal Vesicle\r\nShoulder\r\nSigmoid Colon\r\nSinus\r\nSinus(es),\ \ Maxillary\r\nSkeletal Muscle\r\nSkin\r\nSkull\r\nSmall Bowel\r\nSmall Bowel\ \ - Mucosa Only\r\nSmall Finger\r\nSoft Tissue\r\nSpinal Column\r\nSpinal Cord\r\ \nSpleen\r\nSplenic Flexure\r\nSternum\r\nStomach\r\nStomach - Mucosa Only\r\n\ Subcutaneous Tissue\r\nSynovium\r\nTemporal Cortex\r\nTendon\r\nTestis\r\nThigh\r\ \nThoracic Spine\r\nThorax\r\nThroat\r\nThumb\r\nThymus\r\nThyroid\r\nTibia\r\n\ Tongue\r\nTonsil\r\nTonsil (Pharyngeal)\r\nTrachea / Major Bronchi\r\nTransverse\ \ Colon\r\nTrunk\r\nUmbilical Cord\r\nUreter\r\nUrethra\r\nUrinary Tract\r\nUterus\r\ \nUvula\r\nVagina\r\nVas Deferens\r\nVein\r\nVenous\r\nVertebra\r\nVulva\r\nWhite\ \ Blood Cells\r\nWrist\r\nUnknown\r\nNot Reported\r\nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: biospecimen_laterality constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '2007875' ea_cde_source: caDSR ea_description: For tumors in paired organs, designates the side on which the specimen was obtained. entity: Sample enumeration: "Bilateral\r\nLeft\r\nRight\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: catalog_reference constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: HCMI catalog reference number for cancer model. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: composition constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432591' ea_cde_source: caDSR ea_description: Text term that represents the cellular composition of the sample. entity: Sample enumeration: "2D Classical Conditionally Reprogrammed Cells\r\n2D Modified Conditionally\ \ Reprogrammed Cells\r\n3D Organoid\r\n3D Air-Liquid Interface Organoid\r\n3D\ \ Neurosphere\r\nAdherent Cell Line\r\nBuccal Cells\r\nBuffy Coat\r\nBone Marrow\ \ Components\r\nBone Marrow Components NOS\r\nControl Analyte\r\nCell\r\nDerived\ \ Cell Line\r\nEBV Immortalized\r\nFibroblasts from Bone Marrow Normal\r\nGranulocytes\r\ \nHuman Original Cells\r\nLiquid Suspension Cell Line\r\nLymphocytes\r\nMononuclear\ \ Cells from Bone Marrow Normal\r\nPeripheral Blood Components NOS\r\nPleural\ \ Effusion\r\nPlasma\r\nPeripheral Whole Blood\r\nSerum\r\nSaliva\r\nSputum\r\n\ Solid Tissue\r\nSorted Cells\r\nWhole Bone Marrow\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: current_weight constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432606' ea_cde_source: caDSR ea_description: Numeric value that represents the current weight of the sample, measured in milligrams. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: days_to_collection constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '3008340' ea_cde_source: caDSR ea_description: Time interval from the date of biospecimen collection to the date of initial pathologic diagnosis, represented as a calculated number of days. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Biospecimen column: days_to_sample_procurement constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: The number of days from the date the patient was diagnosed to the date of the procedure that produced the sample. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Biospecimen column: diagnosis_pathologically_confirmed constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: The histologic description of tissue or cells confirmed by a pathology review of frozen or formalin fixed slide(s) completed after the diagnostic pathology review of the tumor sample used to extract analyte(s). entity: Sample enumeration: "Yes\r\nNo\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: distance_normal_to_tumor constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '3088708' ea_cde_source: caDSR ea_description: Text term to signify the distance between the tumor tissue and the normal control tissue that was procured for matching normal DNA. entity: Sample enumeration: "Adjacent (< or = 2cm)\r\nDistal (>2cm)\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: distributor_reference constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '3088708' ea_cde_source: caDSR ea_description: Distributor reference number for cancer model. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: freezing_method constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432607' ea_cde_source: caDSR ea_description: Text term that represents the method used for freezing the sample. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: growth_rate constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: Rate at which the model grows, measured as hours to time to split. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Biospecimen column: initial_weight constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432605' ea_cde_source: caDSR ea_description: Numeric value that represents the initial weight of the sample, measured in milligrams. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: intermediate_dimension constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: Intermediate dimension of the sample, in millimeters. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: is_ffpe constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '4170557' ea_cde_source: caDSR ea_description: Indicator to signify whether or not the tissue sample was fixed in formalin and embedded in paraffin (FFPE). entity: Sample enumeration: "true\r\nfalse" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: longest_dimension constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432602' ea_cde_source: caDSR ea_description: Numeric value that represents the longest dimension of the sample, measured in millimeters. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: method_of_sample_procurement constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: The method used to procure the sample used to extract analyte(s). entity: Sample enumeration: "Abdomino-perineal Resection of Rectum\r\nAnterior Resection of Rectum\r\ \nAspirate\r\nAutopsy\r\nBiopsy\r\nBlood Draw\r\nBone Marrow Aspirate\r\nCore\ \ Biopsy\r\nCystectomy\r\nEndo Rectal Tumor Resection\r\nEndoscopic Biopsy\r\n\ Endoscopic Mucosal Resection (EMR)\r\nEnucleation\r\nExcisional Biopsy\r\nFine\ \ Needle Aspiration\r\nFull Hysterectomy\r\nGross Total Resection\r\nHand Assisted\ \ Laparoscopic Radical Nephrectomy\r\nHysterectomy NOS\r\nIncisional Biopsy\r\n\ Indeterminant\r\nLaparoscopic Biopsy\r\nLaparoscopic Partial Nephrectomy\r\nLaparoscopic\ \ Radical Nephrectomy\r\nLaparoscopic Radical Prostatectomy with Robotics\r\n\ Laparoscopic Radical Prostatectomy without Robotics\r\nLeft Hemicolectomy\r\n\ Lobectomy\r\nLocal Resection (Exoresection; wall resection)\r\nLumpectomy\r\n\ Modified Radical Mastectomy\r\nNeedle Biopsy\r\nOpen Craniotomy\r\nOpen Partial\ \ Nephrectomy\r\nOpen Radical Nephrectomy\r\nOpen Radical Prostatectomy\r\nOrchiectomy\r\ \nOther\r\nOther Surgical Resection\r\nPan-Procto Colectomy\r\nPancreatectomy\r\ \nParacentesis\r\nPartial Hepatectomy\r\nPneumonectomy\r\nRight Hemicolectomy\r\ \nSigmoid Colectomy\r\nSimple Mastectomy\r\nSubtotal Resection\r\nSurgical Resection\r\ \nThoracoscopic Biopsy\r\nTotal Colectomy\r\nTotal Hepatectomy\r\nTotal Mastectomy\r\ \nTransplant\r\nTransurethral resection (TURBT)\r\nTransverse Colectomy\r\nTumor\ \ Resection\r\nWedge Resection\r\nWhipple Procedure\r\nUnknown\r\nNot Reported\r\ \nNot Allowed To Collect" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: oct_embedded constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432538' ea_cde_source: caDSR ea_description: Indicator of whether or not the sample was embedded in Optimal Cutting Temperature (OCT) compound. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: passage_count constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: Number of passages (splits) between the original tissue and this model. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Biospecimen column: pathology_report_uuid constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: UUID of the related pathology report. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Biospecimen column: preservation_method constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432521' ea_cde_source: caDSR ea_description: Text term that represents the method used to preserve the sample. entity: Sample enumeration: 'Cryopreserved FFPE Fresh OCT Snap Frozen Frozen Unknown Not Reported' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: sample_type_id constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: The accompanying sample type id for the sample type. entity: Sample enumeration: '01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 20 40 41 42 50 60 61 85 99' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: shortest_dimension constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432603' ea_cde_source: caDSR ea_description: Numeric value that represents the shortest dimension of the sample, measured in millimeters. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: time_between_clamping_and_freezing constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432611' ea_cde_source: caDSR ea_description: Numeric representation of the elapsed time between the surgical clamping of blood supply and freezing of the sample, measured in minutes. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: time_between_excision_and_freezing constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '5432612' ea_cde_source: caDSR ea_description: Numeric representation of the elapsed time between the excision and freezing of the sample, measured in minutes. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Biospecimen column: tumor_code constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: Diagnostic tumor code of the tissue sample source. entity: Sample enumeration: "Non cancerous tissue\r\nDiffuse Large B-Cell Lymphoma (DLBCL)\r\n\ Lung Cancer (all types)\r\nCervical Cancer (all types)\r\nAnal Cancer (all types)\r\ \nAcute Leukemia of Ambiguous Lineage (ALAL)\r\nAcute lymphoblastic leukemia (ALL)\r\ \nAcute myeloid leukemia (AML)\r\nInduction Failure AML (AML-IF)\r\nNeuroblastoma\ \ (NBL)\r\nOsteosarcoma (OS)\r\nEwing sarcoma\r\nWilms tumor (WT)\r\nClear cell\ \ sarcoma of the kidney (CCSK)\r\nRhabdoid tumor (kidney) (RT)\r\nCNS, ependymoma\r\ \nCNS, glioblastoma (GBM)\r\nCNS, rhabdoid tumor\r\nCNS, low grade glioma (LGG)\r\ \nCNS, medulloblastoma\r\nCNS, other\r\nNHL, anaplastic large cell lymphoma\r\n\ NHL, Burkitt lymphoma (BL)\r\nRhabdomyosarcoma\r\nSoft tissue sarcoma, non-rhabdomyosarcoma" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: tumor_code_id constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: BCR-defined id code for the tumor sample. entity: Sample enumeration: "00\r\n01\r\n02\r\n03\r\n04\r\n10\r\n15\r\n20\r\n21\r\n30\r\n40\r\n\ 41\r\n50\r\n51\r\n52\r\n60\r\n61\r\n62\r\n63\r\n64\r\n65\r\n70\r\n71\r\n80\r\n\ 81" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: tumor_descriptor constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '3288124' ea_cde_source: caDSR ea_description: Text that describes the kind of disease present in the tumor specimen as related to a specific timepoint. entity: Sample enumeration: "Metastatic\r\nNot Applicable\r\nPrimary\r\nRecurrence\r\nXenograft\r\ \nNOS\r\nUnknown\r\nNot Reported" example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: Enumeration - category: Biospecimen column: pool constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. ea_cde_id: '' ea_cde_source: '' ea_description: Any biospecimen entity where multiple cases, samples or aliquots are combined to produce a reference. Sample pooling is commonly used for determining relative protein abundances in labeling experiments. entity: Sample enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: binary - category: 'Processed ' column: spectral_count_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protein Abundance enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: 'Processed ' column: spectral_count_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protein Abundance enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: 'Processed ' column: gene_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protein Abundance enumeration: '' example_value: '' key: Y reference_type: Protein Abundance references measurements for a Gene. referenced_entity: Gene type_general: '' - category: 'Processed ' column: gene_name constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protein Abundance enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: 'Processed ' column: study_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protein Abundance enumeration: '' example_value: '' key: Y reference_type: Protein Abundance references the Study it is derived from. referenced_entity: Study type_general: '' - category: 'Processed ' column: study_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protein Abundance enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: 'Processed ' column: study_run_metadata_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protein Abundance enumeration: '' example_value: '' key: Y reference_type: Protein Abundance references an experimental run of the Study it is derived from. referenced_entity: Study Run Metadata type_general: '' - category: 'Processed ' column: study_run_metadata_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Protein Abundance enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: 'Processed ' column: plex_name constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: For label-free workflows, the plex name is the aliquot (biological sample) identifier. For labelled workflows (iTRAQ, TMT), the plex name indicates the aliquot (biological sample) identifiers and any common reference aliquot (sample) identifier, separated by colons, in reporter ion order. Biological replicates, if any, are indicated by a trailing .1, .2, etc. on the aliquot identifier. entity: Protein Abundance enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: 'Processed ' column: spectral_count constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: Number of spectra matched to peptides associated with the gene in acquisitions from a specific analytical sample entity: Protein Abundance enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: 'Processed ' column: distinct_peptide constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: Number of distinct peptide sequences associated with the gene in acquisitions from a specific analytical sample entity: Protein Abundance enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: 'Processed ' column: unshared_peptide constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: Number of unshared peptide sequences associated with the gene in acquisitions from a specific analytical sample entity: Protein Abundance enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: 'Processed ' column: precursor_area constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: Total precursor area of peptide ions associated with the gene in acquisitions from a specific biological sample. entity: Protein Abundance enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: 'Processed ' column: unshared_precursor_area constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: Total precursor area of peptide ions of unshared peptides only associated with the gene in acquisitions from a specific biological sample. entity: Protein Abundance enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: 'Processed ' column: log_ratio constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: Average log-ratio of sample reporter-ion to common reference of peptide ions associated with the gene in acquisitions from a specific biological sample. entity: Protein Abundance enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: 'Processed ' column: unshared_log_ratio constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Derived results intended to approximate protein abundance for a given gene product. Units of measurement include peptide-spectrum-matches (spectral counts), precursor or reporter ion abundance. ea_cde_id: '' ea_cde_source: '' ea_description: Average log-ratio of sample reporter-ion to common reference of peptide ions of unshared peptides only associated with the gene in acquisitions from a specific biological sample. entity: Protein Abundance enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: number - category: Administrative column: study_id constraint_type: PRIMARY KEY e_cde_id: C63536 e_cde_source: NCIt e_description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Administrative column: study_id constraint_type: UNIQUE e_cde_id: C63536 e_cde_source: NCIt e_description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Administrative column: study_submitter_id constraint_type: UNIQUE e_cde_id: C63536 e_cde_source: NCIt e_description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: study_shortname constraint_type: NOT NULL e_cde_id: C63536 e_cde_source: NCIt e_description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: project_id constraint_type: FOREIGN KEY e_cde_id: C63536 e_cde_source: NCIt e_description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study enumeration: '' example_value: '' key: Y reference_type: Study references the Project it is part of. referenced_entity: Project type_general: '' - category: Administrative column: project_submitter_id constraint_type: NOT NULL e_cde_id: C63536 e_cde_source: NCIt e_description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: submitter_id_name constraint_type: '' e_cde_id: C63536 e_cde_source: NCIt e_description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. ea_cde_id: '' ea_cde_source: '' ea_description: Name of the study as described by the data submitter entity: Study enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: analytical_fraction constraint_type: '' e_cde_id: C63536 e_cde_source: NCIt e_description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. ea_cde_id: '' ea_cde_source: '' ea_description: Type of peptide or protein enrichment entity: Study enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Administrative column: experiment_type constraint_type: '' e_cde_id: C63536 e_cde_source: NCIt e_description: A detailed examination, analysis, or critical inspection of a subject designed to discover facts about it. ea_cde_id: '' ea_cde_source: '' ea_description: General strategy used for differential analysis entity: Study enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: study_run_metadata_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Metadata column: study_run_metadata_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Metadata column: study_run_metadata_submitter_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: study_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study Run Metadata enumeration: '' example_value: '' key: Y reference_type: Study Run Metadata references the Study that used the experimental design. referenced_entity: Study type_general: '' - category: Metadata column: study_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: protocol_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study Run Metadata enumeration: '' example_value: '' key: Y reference_type: Study Run Metadata references the Protocol used in the Study. referenced_entity: Protocol type_general: '' - category: Metadata column: protocol_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Study Run Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: experiment_number constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: Number associated with a specific run of the experiment entity: Study Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: integer - category: Metadata column: experiment_type constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: General strategy used for differential analysis entity: Study Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: analyte constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: Type of peptide or protein enrichment entity: Study Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: fraction constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: Number of fractions in the experimental run entity: Study Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: date constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: Date of the data acquired from the mass spectrometry instrument entity: Study Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: operator constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: Mass Spectrometry instrument operator entity: Study Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: replicate_number constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: Replicate number, if applicable entity: Study Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: condition constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: General experimental metadata describing study design. ea_cde_id: '' ea_cde_source: '' ea_description: 'Biological condition (ex: disease state) of the cases(patients) from which the aliquots derived.' entity: Study Run Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: workflow_metadata_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Workflow Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Metadata column: workflow_metadata_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Workflow Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: Metadata column: workflow_metadata_submitter_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Workflow Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: study_id constraint_type: FOREIGN KEY e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Workflow Metadata enumeration: '' example_value: '' key: Y reference_type: Workflow Metadata references the pipeline used to analyze the Study. referenced_entity: Study type_general: '' - category: Metadata column: study_submitter_id constraint_type: NOT NULL e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Workflow Metadata enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: analytical_fraction constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Type of peptide or protein enrichment entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: experiment_type constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: General strategy used for differential analysis entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: instrument constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Make and model of the mass spectrometry instrument entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: refseq_database_version constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the NCBI Refseq database used in the data analysis pipeline entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: uniport_database_version constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the Uniprot Refseq database used in the data analysis pipeline entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: hgnc_version constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of HGNC database of human gene names used in the data analysis pipeline entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: raw_data_processing constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the tool used to process the proprietary raw data entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: raw_data_conversion constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the tool used to convert the proprietary data into open format entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: sequence_database_search constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the tool used in peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: search_database_parameters constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Parameters used in the peptide identification database search entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: phosphosite_localization constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the tool used for phosphosite localization entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: ms1_data_analysis constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the tool used for MS1 data analysis entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: psm_report_generation constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the tool used to peptide spectral match report generation entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: cptac_dcc_mzidentml constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the tool used to generate mzIdentML from the peptide spectral match report entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: mzidentml_refseq constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the NCBI Refseq database used in mzIdentML entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: mzidentml_uniprot constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the Uniprot Refseq database used in mzIdentiML entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: gene_to_prot constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the tool used to map gene to protein in the data analysis pipeline entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: cptac_galaxy_workflows constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the workflow of data analysis pipeline entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: cptac_galaxy_tools constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the custom scripts used in the data analysis pipeline entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: cdap_reports constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the tool used to generate protein summary reports entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: Metadata column: cptac_dcc_tools constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Tools, versions and parameters used in data analysis pipeline/workflow for analyzing study data. ea_cde_id: '' ea_cde_source: '' ea_description: Name and version of the custom scripts used in the data analysis pipeline entity: Workflow Metadata enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: 'Processed ' column: publication_id constraint_type: PRIMARY KEY e_cde_id: '' e_cde_source: '' e_description: Published scientific research article describing a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Publication enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: 'Processed ' column: publication_id constraint_type: UNIQUE e_cde_id: '' e_cde_source: '' e_description: Published scientific research article describing a study. ea_cde_id: '' ea_cde_source: '' ea_description: '' entity: Publication enumeration: '' example_value: '' key: Y reference_type: '' referenced_entity: '' type_general: '' - category: 'Processed ' column: pubmed_id constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Published scientific research article describing a study. ea_cde_id: '' ea_cde_source: '' ea_description: Identifier of the article in Pubmed system entity: Publication enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string - category: 'Processed ' column: title constraint_type: '' e_cde_id: '' e_cde_source: '' e_description: Published scientific research article describing a study. ea_cde_id: '' ea_cde_source: '' ea_description: Title of the research article entity: Publication enumeration: '' example_value: '' key: '' reference_type: '' referenced_entity: '' type_general: string