category: Metadata
description: 'General experimental metadata describing one part of a study. It serves
  two purposes: <br>(1) to group files (e.g., RPLC fractions) containing data on one
  or more samples, and <br>(2) to document the individual sample-to-channel assignments
  for a multiplexed run.<br> On the PDC portal, we simplify this property''s human-readable
  identifier (study_run_metadata_submitter_id) to ''Run Metadata Id''. Synonyms include
  plex name, plex dataset name, folder name, and more in labeled experiments.'
links:
- label: Study Run Metadata references the Study that used the experimental design.
  name: Study
  required: 'True'
properties:
  alias:
    description: A plex or dataset name used by the submitters
    required: 'False'
    type: String
  analyte:
    description: Type of peptide or protein enrichment
    required: 'False'
    type: String
  condition:
    description: 'Biological condition (ex: disease state) of the cases(patients)
      from which the aliquots derived.'
    required: 'False'
    type: String
  date:
    description: Date of the data acquired from the mass spectrometry instrument
    required: 'False'
    type: Date
  experiment_number:
    description: Number associated with a specific run of the experiment
    required: 'False'
    type: Integer
  experiment_type:
    description: General strategy used for differential analysis
    required: 'True'
    type: String
  folder_name:
    key: 'yes'
    required: 'False'
    type: String
  fraction:
    description: Number of fractions in the experimental run
    required: 'True'
    type: String
  itraq_113:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  itraq_114:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  itraq_115:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  itraq_116:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  itraq_117:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  itraq_118:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  itraq_119:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  itraq_121:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  label_free:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  operator:
    description: Mass Spectrometry instrument operator
    required: 'False'
    type: String
  plex_or_folder_name:
    description: Name used to group the files generated in single experimental run.
      This is same as the study_run_metadata_submitter_id and referred simply as 'Run
      Metadata Id'.
    required: 'True'
    type: String
  polarity:
    description: Ion polarity for the experimental run
    enum:
    - positive
    - negative
    required: False (Required for metabolomics only)
    type: Enumeration
  protocol_id:
    key: 'yes'
    required: 'False'
    type: String
  protocol_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
  replicate_number:
    description: Replicate number, if applicable
    required: 'False'
    type: Integer
  study_id:
    key: 'yes'
    required: 'False'
    type: String
  study_run_metadata_id:
    key: 'yes'
    required: 'False'
    type: String
  study_run_metadata_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
  study_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
  tmt_126:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_127c:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_127n:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_128c:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_128n:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_129c:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_129n:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_130c:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_130n:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_131:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_131c:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_132c:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_132n:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_133c:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_133n:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_134c:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_134n:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
  tmt_135n:
    description: The sample tagged with this isobaric label reagent
    required: 'True'
    type: String
title: Study Run Metadata
type: object
uniqueKeys:
- - study_run_metadata_id
  - study_run_metadata_submitter_id