category: Metadata
description: Tools, versions and parameters used in data analysis pipeline/workflow
  for analyzing study data.
links:
- label: Workflow Metadata references the pipeline used to analyze the Study.
  name: Study
  required: 'True'
properties:
  analytical_fraction:
    description: Type of peptide or protein enrichment
    required: 'False'
    type: String
  cdap_reports:
    description: Name and version of the tool used to generate protein summary reports
    required: 'False'
    type: String
  cptac_dcc_mzidentml:
    description: Name and version of the tool used to generate mzIdentML from the
      peptide spectral match report
    required: 'False'
    type: String
  cptac_dcc_tools:
    description: Name and version of the custom scripts used in the data analysis
      pipeline
    required: 'False'
    type: String
  cptac_galaxy_tools:
    description: Name and version of the custom scripts used in the data analysis
      pipeline
    required: 'False'
    type: String
  cptac_galaxy_workflows:
    description: Name and version of the workflow of data analysis pipeline
    required: 'False'
    type: String
  cptac_study_id:
    key: 'yes'
    required: 'False'
    type: String
  experiment_type:
    description: General strategy used for differential analysis
    required: 'False'
    type: String
  gene_to_prot:
    description: Name and version of the tool used to map gene to protein in the data
      analysis pipeline
    required: 'False'
    type: String
  hgnc_version:
    description: Name and version of HGNC database of human gene names used in the
      data analysis pipeline
    required: 'False'
    type: String
  instrument:
    description: Make and model of the mass spectrometry instrument
    required: 'False'
    type: String
  ms1_data_analysis:
    description: Name and version of the tool used for MS1 data analysis
    required: 'False'
    type: String
  mzidentml_refseq:
    description: Name and version of the NCBI Refseq database used in mzIdentML
    required: 'False'
    type: String
  mzidentml_uniprot:
    description: Name and version of the Uniprot Refseq database used in mzIdentiML
    required: 'False'
    type: String
  phosphosite_localization:
    description: Name and version of the tool used for phosphosite localization
    required: 'False'
    type: String
  protocol_id:
    key: 'yes'
    required: 'False'
    type: String
  protocol_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
  psm_report_generation:
    description: Name and version of the tool used to peptide spectral match report
      generation
    required: 'False'
    type: String
  raw_data_conversion:
    description: Name and version of the tool used to convert the proprietary data
      into open format
    required: 'False'
    type: String
  raw_data_processing:
    description: Name and version of the tool used to process the proprietary raw
      data
    required: 'False'
    type: String
  refseq_database_version:
    description: Name and version of the NCBI Refseq database used in the data analysis
      pipeline
    required: 'False'
    type: String
  search_database_parameters:
    description: Parameters used in the peptide identification database search
    required: 'False'
    type: String
  sequence_database_search:
    description: Name and version of the tool used in peptide identification by scoring
      MS/MS spectra against peptides derived from a protein sequence database
    required: 'False'
    type: String
  study_id:
    key: 'yes'
    required: 'False'
    type: String
  study_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
  study_submitter_name:
    key: 'yes'
    required: 'False'
    type: String
  submitter_id_name:
    key: 'yes'
    required: 'False'
    type: String
  uniport_database_version:
    description: Name and version of the Uniprot Refseq database used in the data
      analysis pipeline
    required: 'False'
    type: String
  workflow_metadata_id:
    key: 'yes'
    required: 'False'
    type: String
  workflow_metadata_submitter_id:
    key: 'yes'
    required: 'False'
    type: String
title: Workflow Metadata
type: object
uniqueKeys:
- - workflow_metadata_id
  - workflow_metadata_submitter_id